search

ELIFE-ASU / ecg

Pulling information from biological databases, and converting it into easy to use gmls for network science.
MIT License
3 stars 2 forks source link

Provide the list of all possible arguments #13

Closed thyamu closed 5 years ago

thyamu commented 5 years ago

https://github.com/ELIFE-ASU/ecg/blob/a07d0c3dc75bfb7a5fb22ba7b001e9f59e913852/ecg/jgi.py#L10

Write the list of all possible arguments at the beginning of description for the script as it is done under the function "scape_domain".

For example, for domain,

Alpha

        'Eukaryota'
        'Bacteria' (wait 45 seconds)
        'Archaea'
        'Plasmids' UNTESTED
        'Viruses' UNTESTED
        'GFragment' (gene fragments) UNTESTED
        ## Alpha2
        '*Microbiome' (metagenome)
        'cell' (metagenome- cell enrichment) UNTESTED
        'sps' (metagenome- single particle sort) UNTESTED
        'Metatranscriptome' UNTESTED
hbsmith commented 5 years ago

This is included with the latest commits.