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ELIXIR-Belgium / seek

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
http://www.seek4science.org
BSD 3-Clause "New" or "Revised" License
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Add study filename to ISAjson export #19

Closed rabuono closed 2 years ago

rabuono commented 2 years ago

The study filename can be populated by the name given by the user to the Study in SEEK. Following the pattern s_StudyNameByUser.txt

floradanna commented 2 years ago

In some documentation, it seems that also Investigation needs a filename: i_InvestigationNameByUser.txt. We could obtained by using the "title": i_title.txt and s_title.txt.

For assay title (a_title.txt), we need to have "stream" or "experiment" (group of assays) first or come up with temporary solution. Temporarily, it could be the "isa measurement type" from the first assay template.

rabuono commented 2 years ago

Agreed. The SEEK Title given by the user for both Investigation and Study can be used to name the files.

Also agreed with having a temporary solution for Assay, until we get the possibility of having streams. For now a_assays.txt might be sufficient.

vdk88 commented 2 years ago

Fixed

rabuono commented 2 years ago

Looks fixed on my current export. Thanks