Ontology name not visualised in sample_type

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Ontology name not visualised in sample_type #43

Open floradanna opened 2 years ago

floradanna commented 2 years ago

In sample_type, the ontology name is the same of the attribute name, but it should be the name of the ontology instead, as specified in template.

Screenshot 2022-05-02 at 09 35 21

Screenshot 2022-05-02 at 09 34 36

floradanna commented 2 years ago

Would it be better to shown the ontology name or description? Name is shorter, Description is more descriptive.

vdkkia commented 2 years ago

@floradanna ENVO in your example is the name of the source. Do you want it to be shown?

floradanna commented 2 years ago

We need to agree with Rafael on what to show first:

ENVO
Environmental Ontology
the rootTerm name
the rootTermURI
the link to the entire ontology
...?

Let's skip this issue for now and keep it open. It is not urgent.

floradanna commented 2 years ago

sample_controlled_vocabs title should be = the name or description of the ontology. Example: Attribute name = organism part; sample_controlled_vocabs title = efo or Experimental Factor Ontology.

Ideally, the sample_controlled_vocabs title would be the term associated with the rootTermURI, but not sure if this info get stored somewhere in the instance database.

floradanna commented 2 years ago

Found new issue for Ontology term "organism". Not all ontology terms are available in the dynamic table. Maybe time out issue?

Possible solution: when installing the instance, all terms need to be loaded and stored (it might takes several hours but only at the beginning).

floradanna commented 2 years ago

@vdkkia The sample_controlled_vocabs title would be the term associated with the rootTermURI, which it should be stored somewhere in the instance. Could you please do this?