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ELTEbioinformatics / mulea

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
https://www.biorxiv.org/content/10.1101/2024.02.28.582444v1
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wrong column in the run_test result when using gsea model #20

Closed barizona closed 9 months ago

barizona commented 9 months ago

There are 2 columns in the run_test result when using gsea model: nr_common_genes_ontology_set and nr_common_genes_ontology_background which contain the same numbers. One of them must be deleted and the column should be named as nr_common_genes_ontology_tested.

(although the word "genes" should be changed to "elements" in every result df header)

@koralgooll

koralgooll commented 9 months ago

I have fixed the issue. Regeneration of README.md is necessary, as old columns are there. I don't wish to do this, as it could cause more problems if I overwrite something. Can you help with it @barizona ?

barizona commented 9 months ago

Thanks! I have regenerated the readme