Closed barizona closed 6 months ago
Hi, I'm not getting this error. However, since updating the column names to snake case the axis and legend titles are: get(ontology_id_colname) and get(p_value_type_colname). @koralgooll can you please check this? I only replaced the name in SubramanianTest.R (see commit: https://github.com/ELTEbioinformatics/mulea/commit/2da673259fc68a97b36becce855182de38811f9c). I can manually rename them if you'd like with the ggplot xlab, ylab and labs functions.
Yes, now it runs for me as well. Maybe it was an RStudio error (sometimes when I restart RStudio some errors disappear)? Now the plot looks like this:
I have corrected the function
There is a segmentation error when plotting lollipop with the gsea reshaped results: "Quitting from lines 480-487 [lollipop_plot_gsea] (README.Rmd) Error in
geom_segment()
: ! Problem while computing aesthetics. ℹ Error occurred in the 1st layer. Caused by error: ! object 'eFDR' not found Backtrace:Therefore in the README I set it to eval=FALSE till correcting this error. @olbeimarton , can you correct it? Or @koralgooll ?