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EMBL-PKU / BASALT

MIT License
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IndexError: list index out of range #1

Closed Caiyulu-818 closed 6 months ago

Caiyulu-818 commented 3 years ago

hello I have two questions first the parameter--long-reads which have two fa 1&2 ，but the long reads from nanopore is only One end , so just put the one fa ? second error , There are the following error messages， File "/public/home/XXX/miniconda3/envs/BASALT/bin/BASALT", line 56, in datasets[str(n)].append(pr[1].strip()) IndexError: list index out of range how can I solve this problem by changing some parameter？

EMBL-PKU commented 3 years ago

Thank you for using BASALT. Now BASALT has been updated. You can try again.

raw937 commented 1 year ago

I had the same error. It's still not fixed. Traceback (most recent call last): File "/users/raw937/.conda/envs/BASALT/bin/BASALT", line 57, in datasets[str(n)].append(pr[1].strip()) IndexError: list index out of range

In basalt main .py Line 57 f.write('BASALT started from 1st step'+'\n')

In BASALT Line 54 datasets, n = {}, 0 for item in datasets_list: n+=1 Line 57 datasets[str(n)]=[] pr=str(item).split(',') datasets[str(n)].append(pr[0].strip()) datasets[str(n)].append(pr[1].strip())