search

EMBL-PKU / BASALT

MIT License
76 stars 13 forks source link

checkm2 database not found #13

Open Caiyulu-818 opened 4 months ago

Caiyulu-818 commented 4 months ago

Hi, when I run BASALT for binning, the error : INFO: Running CheckM2 version 1.0.1 [03/13/2024 12:56:34 PM] INFO: Running quality prediction workflow with 30 threads. [03/13/2024 12:56:34 PM] ERROR: DIAMOND database not found. Please download database using <checkm2 database --download>

it is because CheckM2 database was not installed auto when Installing the BASALT with conda based on the basaltenv.yml?

lihy-xx commented 4 months ago

checkm2 database --download or Manually download the databaseļ¼šcheckm2 database --setdblocation /xxx/xxx/db/CheckM2_database/uniref100.KO.1.dmnd

noddevil4949 commented 4 months ago

Hi, Thanks for your question. Unlike CheckM, CheckM2 database cannot be installed automatically in conda installation. We are currently fixing this issue. For now, you download manually following the installation guide in CheckM2

Thanks for using BASALT, Galaxy