search

EMBL-PKU / BASALT

MIT License
85 stars 13 forks source link

'NoneType' object has no attribute 'split' #4

Closed cc9678 closed 6 months ago

cc9678 commented 1 year ago

Hi,

I had en error message when I ran "BASALT -a assembly.fasta -l barcode89_filtlong.fastq --module autobinning"

Traceback (most recent call last): File "/dss/dsshome1/lxc04/ge24yaf2/.conda/envs/BASALT/bin/BASALT", line 53, in datasets_list=sr_datasets.split('/')

My sequences are nanopore long reads, therefore I don't have any input for -s option. This error seems points to the short pair-end reads, do you know how should I deal with it?

noddevil4949 commented 1 year ago

Hi,

Thank you for using BASALT. Unfortunately, BASALT does not support long-read sequences alone for binning at the moment, because it does not generate proper contig coverage from nanopore reads. You may have a try with short+long reads if there is any dataset available.

Regards, Galaxy