About define promoter region from gencode.gtf file

ENCODE-DCC / atac-seq-pipeline

ENCODE ATAC-seq pipeline

MIT License

389 stars 174 forks source link

Open GleeenSIBS opened 2 months ago

GleeenSIBS commented 2 months ago

Hello,

I want to know how to define gene promoter (tss ±2k) from genconde.gtf file? Because a gene may have two or three or even more transcripts.

Thanks ;)