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ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline
MIT License
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choose_ctl returns index instead of file #138

Closed leepc12 closed 4 years ago

leepc12 commented 4 years ago

To resolve d diamond dependency problem.

choose_ctl takes in all TAG-ALIGNs (both exp IPs, controls) and find an appropriate control for each exp IP replicate.

Before this PR, choose_ctl returned File control TAG-ALIGN instead of Int index of it. So this broke search up algorithm of ENCODE accessioning code and Croo.

Now choose_ctl returns an ID of control TAG-ALIGN instead of File.