error with install_conda_env.sh

[ychsiao1]

Describe the bug I'm essentially getting the same error as #162, except i'm on ubuntu 18:04. How should I fix this? It used to work fine before.

OS/Platform

OS/Platform: Ubuntu:18.04 Conda version: Conda 4.7.12 Pipeline version: latest Caper version: [e.g. v0.6.0] Caper configuration file Paste contents of ~/.caper/default.conf.

Input JSON file Paste contents of your input JSON file.

Error log conda 4.7.12 === Installing pipeline's Conda environments === Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done

[leepc12]

Doesn't look like the same error as #162 . I think it's just taking long to resolve dependency conflicts? Please attach a full error log.

[ychsiao1]

conda 4.7.12 === Installing pipeline's Conda environments === Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... install_conda_env.sh: line 15: 4996 Killed conda create -n ${CONDA_ENV_PY3} --file ${REQ_TXT_PY3} -y -c defaults -c r -c bioconda -c conda-forge Could not find conda environment: encode-chip-seq-pipeline You can list all discoverable environments with conda info --envs.

This is the error message I'm getting while trying to build on a Docker image.

[leepc12]

4996 Killed conda create -n ....

Your cluster killed it. Please run it on a compute node. For our pipeline, Conda has nothing to do with docker stuff.

[ychsiao1]

can you point me to how to do this on linux. Thanks