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ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline
MIT License
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Conda env installation on a custom folder #196

Closed Fnyasimi closed 3 years ago

Fnyasimi commented 3 years ago

I am setting up a pipeline on a cluster but I have a challenge installing the environment on a custom path which is visible to all nodes on the hpc.

The reason I am doing this is because the environments in the base conda directory are not visible to all the nodes hence the need to install on a custom path which is visible to all computing nodes.

I have tried using --prefix but I didn't manage to set up the pipeline configurations.

Kindly help me set up tweak the installation scripts to set up the environments in a custom path and do all the necessary configurations.

Ps: I don't have sudo rights to the cluster

Fnyasimi commented 3 years ago

@leepc12 I would specifically to sept up the tool versions for the v1.4.0.1 pipeline version because all my json files are configured for that version and I have already analyzed half of the work using that version. I would like to maintain the consistence

leepc12 commented 3 years ago

Install miniconda3 on the path visible to all nodes and remove all other condas from your PATH.

Fnyasimi commented 3 years ago

Thanks for the update