Pip 1433 starch - Githubissues

ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline

MIT License

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Pip 1433 starch #197

Closed leepc12 closed 3 years ago

leepc12 commented 3 years ago

Added starch files to croo JSON. Added bedops (with sort-bed, starch and unstarch) to Conda and docker image. Added starch outputs to corresponding WDL tasks.

ChIP and ATAC share the same peak_to_starch() and starch_to_bed_gz() functions, so they will be tested in ChIP only.