added use_bowtie2_local - Githubissues

ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline

MIT License

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added use_bowtie2_local #216

Closed leepc12 closed 3 years ago

leepc12 commented 3 years ago

Added chip.use_bowtie2_local to the pipeline.

To add --local (bowtie2's local mode: soft-clipping) to bowtie2 command line