Unable to run caper on windows

ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline

MIT License

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Unable to run caper on windows #258

Closed silentsilencee closed 2 years ago

silentsilencee commented 2 years ago

hey team:

I have followed the steps mentioned in the README which involves pip3 install caper. When trying to do caper init on a windows 10 machine i get an error saying command not recognized. This is even after resetting my bashrc and tryin the export command mentioned. What can i do to solve this issue?

best

leepc12 commented 2 years ago

Did you run it on Ubuntu (as Windows sub-system)?

silentsilencee commented 2 years ago

Hey @leepc12 i did not run it on ubuntu. Does this only work for Ubuntu?

leepc12 commented 2 years ago

Yes, it should work on Ubuntu (Windows sub-system). It doesn't run on Windows shell. Open up Microsoft store app and install Ubuntu.