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ENCODE-DCC / chip-seq-pipeline2

ENCODE ChIP-seq pipeline
MIT License
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Are adapter-trimmed FASTQs required? #283

Open benayang opened 2 years ago

benayang commented 2 years ago

I was wondering why the ChIP-Seq pipeline doesn't include an adapter trimming step like in the ATAC-Seq pipeline. Are adapter-trimmed FASTQs required for this pipeline?

wbszhu commented 1 year ago

I have the same confuse.

leepc12 commented 1 year ago

Our ChIP-Seq doesn't have such adapter trimming as in ATAC-Seq one.

wbszhu commented 1 year ago

Thank you for your reply~ I believe that if this functionality is added, the pipeline will be even better！ Lu Zhang.