Open agduncan94 opened 1 year ago
Having the same issue with the same set up:
OS/Platform: Ubuntu 20.04 Pipeline version: 2.2.0 Caper version: 2.2.2 Conda v4.13.0
Just to add a little to this, inspecting the install script, the following conda env will create without issue
conda create -n encd-chip-macs2 --file ${SH_SCRIPT_DIR}/requirements.macs2.txt \
--override-channels -c bioconda -c defaults -y
but the two below fail for me:
conda create -n encd-chip --file ${SH_SCRIPT_DIR}/requirements.txt \
--override-channels -c bioconda -c defaults -y
conda create -n encd-chip-spp --file ${SH_SCRIPT_DIR}/requirements.spp.txt \
--override-channels -c r -c bioconda -c defaults -y
We will make a fix for this soon. Until then please install Singularity or Docker and use --singularity
or --docker
method.
Describe the bug
When running the install_conda_env.sh script to setup the conda environments, there are many conflicts that are found, causing the install to fail.
It seems to be the encd-chip and encd-chip-spp failing. The encd-chip-macs2 environment installs fine.
OS/Platform
Caper configuration file
Paste contents of
~/.caper/default.conf
.Troubleshooting result
Here is the beginning output from trying to install encd-chip-spp
Here is the full output for trying to install encd-chip-spp failed.chip.pipeline.install.conda.txt