Open jamesaliba opened 1 year ago
1-Im using the hg38 from your link: bash scripts/download_genome_data.sh hg38
My input BAM files are have names like chr1 chrX chr1_KI270706v1_random as far as i know they resemble the downloaded hg38
The pipeline says if a genome is downloaded and have similar chromosome names as the bams, motif analysis is automatic.
2-macs peaks were called, i thought the default for tf was spp? i do have input controls
1-Im using the hg38 from your link: bash scripts/download_genome_data.sh hg38
My input BAM files are have names like chr1 chrX chr1_KI270706v1_random as far as i know they resemble the downloaded hg38
The pipeline says if a genome is downloaded and have similar chromosome names as the bams, motif analysis is automatic.
2-macs peaks were called, i thought the default for tf was spp? i do have input controls