search

ENCODE-DCC / encoded

Metadata database for ENCODE project
https://www.encodeproject.org
MIT License
110 stars 51 forks source link

Error running bin/create-mapping production.ini --app-name app/AWS question #3085

Closed skotechaeng closed 4 years ago

skotechaeng commented 4 years ago

One more issue. I get the error below when running: bin/create-mapping production.ini --app-name app

I am running this on Azure and I have some questions. Is there any data that is being pulled out of S3 buckets or are there files as part of the build that create the index etc. Would love any ideas on what I need to change to run this on Azure/on-prem. Appreciate any help.

Traceback (most recent call last): File "bin/create-mapping", line 103, in sys.exit(snovault.elasticsearch.create_mapping.main()) File "/home/encoded/encoded/develop/snovault/src/snovault/elasticsearch/create_mapping.py", line 534, in main app = get_app(args.config_uri, args.app_name) File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/paster.py", line 31, in get_app global_conf=options) File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 247, in loadapp return loadobj(APP, uri, name=name, kw) File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 272, in loadobj return context.create() File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 710, in create return self.object_type.invoke(self) File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 146, in invoke return fix_call(context.object, context.global_conf, context.local_conf) File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/util.py", line 55, in fix_call val = callable(*args, **kw) File "/home/encoded/encoded/src/encoded/init.py", line 217, in main config.include('snovault') File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/config/init.py", line 798, in include c(configurator) File "/home/encoded/encoded/develop/snovault/src/snovault/init.py", line 60, in includeme config.include('.storage') File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/config/init.py", line 798, in include c(configurator) File "/home/encoded/encoded/develop/snovault/src/snovault/storage.py", line 54, in includeme store_profile_name=registry.settings.get('blob_store_profile_name') File "/home/encoded/encoded/develop/snovault/src/snovault/storage.py", line 303, in init self.store_conn = boto3.Session(profile_name=store_profile_name).client('s3') File "/home/encoded/encoded/eggs/boto3-1.7.30-py3.4.egg/boto3/session.py", line 80, in init self._setup_loader() File "/home/encoded/encoded/eggs/boto3-1.7.30-py3.4.egg/boto3/session.py", line 120, in _setup_loader self._loader = self._session.get_component('data_loader') File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 726, in get_component return self._components.get_component(name) File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 922, in get_component self._components[name] = factory() File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 184, in lambda: create_loader(self.get_config_variable('data_path'))) File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 279, in get_config_variable elif self._found_in_config_file(methods, var_config): File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 306, in _found_in_config_file return var_config[0] in self.get_scoped_config() File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 383, in get_scoped_config raise ProfileNotFound(profile=profile_name) botocore.exceptions.ProfileNotFound: The config profile (encoded-files-upload) could not be found

keenangraham commented 4 years ago

Yes, I don't think this is supported for external users, as it would load production data (some of which is private) into Elasticsearch. The specific error above is complaining about not having the right AWS keys:

botocore.exceptions.ProfileNotFound: The config profile (encoded-files-upload) could not be found

I think the best you can do here is run dev servers, which loads fake data from local file:

bin/dev-servers development.ini --app-name app --clear --init --load bin/pserve development.ini

skotechaeng commented 4 years ago

Thanks so much Keenan. I had tried that to avoid the AWS keys issue and got the following. Postgres issue of some type. Is there something I need to change in an ini file?

Traceback (most recent call last): File "bin/dev-servers", line 103, in sys.exit(snovault.dev_servers.main()) File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 79, in main postgresql_fixture.initdb(pgdata, echo=True) File "/home/encoded/encoded/develop/snovault/src/snovault/tests/postgresql_fixture.py", line 20, in initdb stderr=subprocess.STDOUT, File "/usr/lib/python3.4/subprocess.py", line 607, in check_output with Popen(*popenargs, stdout=PIPE, **kwargs) as process: File "/usr/lib/python3.4/subprocess.py", line 859, in init restore_signals, start_new_session) File "/usr/lib/python3.4/subprocess.py", line 1457, in _execute_child raise child_exception_type(errno_num, err_msg) FileNotFoundError: [Errno 2] No such file or directory: 'initdb'

keenangraham commented 4 years ago

FileNotFoundError: [Errno 2] No such file or directory: 'initdb'

You might want to try and set your own --datadir. Looks like it's trying to use this tmp directory and not finding it: https://github.com/ENCODE-DCC/snovault/blob/f92ae8eeeebc811cf8cc81665d5d8a7c53c2af4f/src/snovault/dev_servers.py#L62

Not sure if this is a problem with the buildout or running on Azure.

skotechaeng commented 4 years ago

Thanks. That might be it. I will try that.

hitz commented 4 years ago

Hi @skotechaeng - not sure we've met but if you are interested in using encoded in production I can invite you to our collaborations slack channel. Send me an email at hitz@stanford.edu.

skotechaeng commented 4 years ago

I changed --datadit and still no luck. It may be an issue with postgres? When I see this: File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 79, in main postgresql_fixture.initdb(pgdata, echo=True) it seems there may be an issue with initdb, which does not come with postgres but an postgres cluster creation too called postgres-xc. Appreciate any other thoughts on this.

hitz commented 4 years ago

Are you using a default postgres install for ubuntu? I think you might need to apt get the following:

Should work with pg11.

skotechaeng commented 4 years ago

Made progress; I set the following path for the pg binaries and the database got created:

export PATH=$PATH:/usr/lib/postgresql/9.3/bin

I have an Elastic issue now but I bet it has something to do with the path :-). Will keep hacking at it.

bin/dev-servers development.ini --app-name app --init --clear The files belonging to this database system will be owned by user "encoded". This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8". The default database encoding has accordingly been set to "UTF8". The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok creating subdirectories ... ok selecting default max_connections ... 100 selecting default shared_buffers ... 128MB creating configuration files ... ok creating template1 database in /tmp/snovault/pgdata/base/1 ... ok initializing pg_authid ... ok initializing dependencies ... ok creating system views ... ok loading system objects' descriptions ... ok creating collations ... ok creating conversions ... ok creating dictionaries ... ok setting privileges on built-in objects ... ok creating information schema ... ok loading PL/pgSQL server-side language ... ok vacuuming database template1 ... ok copying template1 to template0 ... ok copying template1 to postgres ... ok syncing data to disk ... ok

Success. You can now start the database server using:

postgres -D /tmp/snovault/pgdata

or pg_ctl -D /tmp/snovault/pgdata -l logfile start

LOG: database system was shut down at 2020-01-08 17:56:01 UTC LOG: MultiXact member wraparound protections are now enabled LOG: autovacuum launcher started LOG: database system is ready to accept connections Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata NOT IN TRAVIS ['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf'] Traceback (most recent call last): File "bin/dev-servers", line 103, in sys.exit(snovault.dev_servers.main()) File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 82, in main elasticsearch = elasticsearch_fixture.server_process(esdata, echo=True) File "/home/encoded/encoded/develop/snovault/src/snovault/tests/elasticsearch_fixture.py", line 30, in server_process stderr=subprocess.STDOUT, File "/usr/lib/python3.4/subprocess.py", line 859, in init restore_signals, start_new_session) File "/usr/lib/python3.4/subprocess.py", line 1457, in _execute_child raise child_exception_type(errno_num, err_msg) FileNotFoundError: [Errno 2] No such file or directory: 'elasticsearch' encoded@datanav-demo:~/encoded$ cd /tmp/snovault/pgdata

hitz commented 4 years ago

How did you install elasticsearch? Which version and is it in your path?

skotechaeng commented 4 years ago

I installed 5.6.3 and looks like I am all set on the path. Looks like I have something working. I have kicked of bin/dev-servers development.ini --app-name app --clear --init --load

I should run bin/pserve development.ini after the first step is done correct?

I might still run into issue but I have gotten past a lot of the major hurdles - Thanks Ben and Keenan. I will close the issue once I have the app fully running. Besides the ideas you guys gave me, I found a number of things I have to do to make this run on Azure without using scripts.

hitz commented 4 years ago

yeah that is the next step.

skotechaeng commented 4 years ago

I know the production indexing process takes a while. What about development? The index creation starts and then freezes. I changed the JVM heap settings to 8g mix and max.

hitz commented 4 years ago

shouldn't take more than a few minutes. Likely it freezing is an ES issue. I have been having some trouble myself on my new mac. I think it doesn't always find our specific elasticsearch configs.

skotechaeng commented 4 years ago

Thanks. I am getting the following. Doesn't like like anything is happening. Yeah seems like an ES. I will keep working on it. Also when do the tables in postgres get created? Does it create a database called encoded?

[2020-01-09T17:38:11,694][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [filtering_quality_metric/_H-tRMttQSGF6iLRaNFzCA] create_mapping [filtering_quality_metric] [2020-01-09T17:38:11,727][INFO ][o.e.c.m.MetaDataCreateIndexService] [bT_vsYL] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T17:38:12,078][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [analysis_step/4F4xIk_wQa2pPMPr-Db9tg] create_mapping [analysis_step] [2020-01-09T17:49:20,619][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [snovault/Hbryl39uQWqpu0xz0hrA5A] update_mapping [meta] [2020-01-09T17:49:22,278][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [snovault/Hbryl39uQWqpu0xz0hrA5A] update_mapping [meta] [2020-01-09T17:54:08,022][INFO ][o.e.m.j.JvmGcMonitorService] [bT_vsYL] [gc][1001] overhead, spent [314ms] collecting in the last [1s]

hitz commented 4 years ago

this is when you run dev-servers command? Did you run the tests?

skotechaeng commented 4 years ago

Yes this is when I run dev-servers. dev-servers does not finish and gets stuck here.

hitz commented 4 years ago

It should "hang" because the databases are waiting to be connected to. You can check ES from another window by something like: >curl localhost:9201 It shouldn't be garbage collecting (GC) but that is something that ES does...

My output is:

`bin/dev-servers development.ini --app-name app --clear --init --load
The files belonging to this database system will be owned by user "hitz".
This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8".
The default database encoding has accordingly been set to "UTF8".
The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok
creating subdirectories ... ok
selecting default max_connections ... 100
selecting default shared_buffers ... 128MB
selecting default timezone ... America/Los_Angeles
selecting dynamic shared memory implementation ... posix
creating configuration files ... ok
running bootstrap script ... ok
performing post-bootstrap initialization ... ok
syncing data to disk ... ok

Success. You can now start the database server using:

    pg_ctl -D /tmp/snovault/pgdata -l logfile start

2020-01-09 11:30:25.079 PST [30256] LOG:  listening on Unix socket "/tmp/snovault/pgdata/.s.PGSQL.5432"
2020-01-09 11:30:25.089 PST [30257] LOG:  database system was shut down at 2020-01-09 11:30:25 PST
2020-01-09 11:30:25.092 PST [30256] LOG:  database system is ready to accept connections
Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata
NOT IN TRAVIS
['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf']
[2020-01-09T11:30:27,000][INFO ][o.e.n.Node               ] [] initializing ...
[2020-01-09T11:30:27,090][INFO ][o.e.e.NodeEnvironment    ] [Kho6DoB] using [1] data paths, mounts [[/System/Volumes/Data (/dev/disk1s2)]], net usable_space [594.9gb], net total_space [931.5gb], spins? [unknown], types [apfs]
[2020-01-09T11:30:27,090][INFO ][o.e.e.NodeEnvironment    ] [Kho6DoB] heap size [1.9gb], compressed ordinary object pointers [true]
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] node name [Kho6DoB] derived from node ID [Kho6DoBCR9CJe1cI8LaVoQ]; set [node.name] to override
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] version[5.6.16], pid[30264], build[3a740d1/2019-03-13T15:33:36.565Z], OS[Mac OS X/10.15.2/x86_64], JVM[AdoptOpenJDK/OpenJDK 64-Bit Server VM/1.8.0_232/25.232-b09]
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] JVM arguments [-Xms2g, -Xmx2g, -XX:+UseConcMarkSweepGC, -XX:CMSInitiatingOccupancyFraction=75, -XX:+UseCMSInitiatingOccupancyOnly, -XX:+AlwaysPreTouch, -Xss1m, -Djava.awt.headless=true, -Dfile.encoding=UTF-8, -Djna.nosys=true, -Djdk.io.permissionsUseCanonicalPath=true, -Dio.netty.noUnsafe=true, -Dio.netty.noKeySetOptimization=true, -Dio.netty.recycler.maxCapacityPerThread=0, -Dlog4j.shutdownHookEnabled=false, -Dlog4j2.disable.jmx=true, -Dlog4j.skipJansi=true, -XX:+HeapDumpOnOutOfMemoryError, -Des.path.home=/usr/local/Cellar/elasticsearch@5.6/5.6.16/libexec]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [aggs-matrix-stats]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [ingest-common]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-expression]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-groovy]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-mustache]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-painless]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [parent-join]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [percolator]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [reindex]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [transport-netty3]
[2020-01-09T11:30:27,728][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [transport-netty4]
[2020-01-09T11:30:27,728][INFO ][o.e.p.PluginsService     ] [Kho6DoB] no plugins loaded
[2020-01-09T11:30:28,903][INFO ][o.e.d.DiscoveryModule    ] [Kho6DoB] using discovery type [single-node]
[2020-01-09T11:30:29,253][INFO ][o.e.n.Node               ] initialized
[2020-01-09T11:30:29,253][INFO ][o.e.n.Node               ] [Kho6DoB] starting ...
[2020-01-09T11:30:29,376][INFO ][o.e.t.TransportService   ] [Kho6DoB] publish_address {127.0.0.1:9300}, bound_addresses {127.0.0.1:9300}
[2020-01-09T11:30:29,396][INFO ][o.e.c.s.ClusterService   ] [Kho6DoB] new_master {Kho6DoB}{Kho6DoBCR9CJe1cI8LaVoQ}{9GcpIOKjRPaHAUkFQ4cwaw}{127.0.0.1}{127.0.0.1:9300}, reason: single-node-start-initial-join[{Kho6DoB}{Kho6DoBCR9CJe1cI8LaVoQ}{9GcpIOKjRPaHAUkFQ4cwaw}{127.0.0.1}{127.0.0.1:9300}]
[2020-01-09T11:30:29,407][INFO ][o.e.h.n.Netty4HttpServerTransport] [Kho6DoB] publish_address {127.0.0.1:9201}, bound_addresses {127.0.0.1:9201}
[2020-01-09T11:30:29,407][INFO ][o.e.n.Node               ] [Kho6DoB] started
detected start, broke
returning process
Started: http://localhost:8000
CREATE MAPPING RUNNING
INFO:encoded:Loaded 77 of 77 user (phase 1). CREATED: 77, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 award (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 33 of 33 lab (phase 1). CREATED: 33, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 organism (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 source (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 51 of 51 gene (phase 1). CREATED: 51, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 target (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 28 of 28 publication (phase 1). CREATED: 28, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 37 of 37 document (phase 1). CREATED: 37, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 antibody_lot (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 biosample_type (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 antibody_characterization (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 treatment (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 mouse_donor (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 fly_donor (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 worm_donor (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 human_donor (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 donor_characterization (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 genetic_modification (phase 1). CREATED: 11, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 genetic_modification_characterization (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 54 of 54 biosample (phase 1). CREATED: 54, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 biosample_characterization (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 14 of 14 platform (phase 1). CREATED: 14, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 60 of 60 library (phase 1). CREATED: 60, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 52 of 52 experiment (phase 1). CREATED: 52, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 5 of 5 functional_characterization_experiment (phase 1). CREATED: 5, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 72 of 72 replicate (phase 1). CREATED: 72, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 annotation (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 project (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 reference (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 ucsc_browser_composite (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 experiment_series (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software_version (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 30 of 30 analysis_step (phase 1). CREATED: 30, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 analysis_step_version (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 pipeline (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step_run (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 143 of 143 file (phase 1). CREATED: 143, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 star_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_type_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 bismark_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cpg_correlation_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 atac_alignment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_library_complexity_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_peak_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_replication_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_samstat_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_library_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_peak_enrichment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_replication_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chipseq_filter_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 samtools_flagstats_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 mad_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 correlation_quality_metric (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 edwbamstats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 hotspot_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_summary_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 complexity_xcorr_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 duplicates_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 filtering_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 trimming_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 samtools_stats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 histone_chipseq_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 generic_quality_metric (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gencode_category_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 image (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 36 of 36 page (phase 1). CREATED: 36, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cart (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 access_key (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 77 of 77 user (phase 2). CREATED: 0, UPDATED: 77, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 0 of 0 treatment (phase 2). CREATED: 0, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 mouse_donor (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 fly_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 worm_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 human_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 biosample (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 library (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 experiment (phase 2). CREATED: 0, UPDATED: 11, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 functional_characterization_experiment (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 annotation (phase 2). CREATED: 0, UPDATED: 7, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 project (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 reference (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 ucsc_browser_composite (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 2). CREATED: 0, UPDATED: 4, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step (phase 2). CREATED: 0, UPDATED: 12, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 39 of 39 file (phase 2). CREATED: 0, UPDATED: 39, SKIPPED: 0, ERRORS: 0
Started. ^C to exit.
[2020-01-09T11:30:29,422][INFO ][o.e.g.GatewayService     ] [Kho6DoB] recovered [0] indices into cluster_state
[2020-01-09T11:30:32,428][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [snovault] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,658][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [snovault/PVsgjxkTQoeh3M_ZbW9qow] create_mapping [meta]
[2020-01-09T11:30:32,672][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [library] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,754][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [library/lFH7_-EDRkiQRF-kH3SShQ] create_mapping [library]
[2020-01-09T11:30:32,777][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [document] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,841][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [document/75uj7MZHRGyLOQTFNrGaeQ] create_mapping [document]
[2020-01-09T11:30:32,871][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment_time_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,085][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment_time_series/8IJAsEMbRGOYP3owX36A1Q] create_mapping [treatment_time_series]
[2020-01-09T11:30:33,156][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,297][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [experiment/4nzObPZXRiuxtiFRvpPkxQ] create_mapping [experiment]
[2020-01-09T11:30:33,371][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample_type] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,449][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample_type/OoDmmbDlSDOjaiDNCKaUbg] create_mapping [biosample_type]
[2020-01-09T11:30:33,463][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [hotspot_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,514][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [hotspot_quality_metric/ItyiTTm6SiqvVmyH12-7SQ] create_mapping [hotspot_quality_metric]
[2020-01-09T11:30:33,525][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,577][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_peak_enrichment_quality_metric/6nZfstBOSQiax0YJPxb-aA] create_mapping [chip_peak_enrichment_quality_metric]
[2020-01-09T11:30:33,588][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [generic_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,638][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [generic_quality_metric/97VOuXUmT1qk5Q1rRGoNlg] create_mapping [generic_quality_metric]
[2020-01-09T11:30:33,647][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_dependencies] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,695][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_dependencies/mlO6xPPDR0m8N9L9BY-2Ww] create_mapping [testing_dependencies]
[2020-01-09T11:30:33,709][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [annotation] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,781][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [annotation/Hx_vF3-tSbqui2oYTDdp5w] create_mapping [annotation]
[2020-01-09T11:30:33,805][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gencode_category_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,844][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gencode_category_quality_metric/vE-AY0BrTYmoAQWyFk6Qkg] create_mapping [gencode_category_quality_metric]
[2020-01-09T11:30:33,853][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [antibody_lot] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,906][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [antibody_lot/6bPUbjTJTgei2nX5iPlX_Q] create_mapping [antibody_lot]
[2020-01-09T11:30:33,918][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [samtools_stats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,988][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [samtools_stats_quality_metric/oUwpX9E4RVu9ABIdZQztEQ] create_mapping [samtools_stats_quality_metric]
[2020-01-09T11:30:33,996][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [test-encode-item] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,067][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [test-encode-item/x17gd8PtRxiD0Z2NvaMmyg] create_mapping [test-encode-item]
[2020-01-09T11:30:34,075][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [award] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,222][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [award/i8oq5kJiSKG03PZq-d3o_g] create_mapping [award]
[2020-01-09T11:30:34,231][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,294][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_replication_quality_metric/gZNJr7BUQ0GaHX1C_-ZgtA] create_mapping [atac_replication_quality_metric]
[2020-01-09T11:30:34,304][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,373][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample/CH7rhLdfQGaHpmlmuPcLnA] create_mapping [biosample]
[2020-01-09T11:30:34,394][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [experiment_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,467][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [experiment_series/jDJ3nh2xR8mOohXi-08ljQ] create_mapping [experiment_series]
[2020-01-09T11:30:34,478][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [image] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,521][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [image/2nm0DHM9RDGa_TIrGsJqXA] create_mapping [image]
[2020-01-09T11:30:34,529][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [human_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,585][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [human_donor/C5-NzAUnRia33emA72fb2g] create_mapping [human_donor]
[2020-01-09T11:30:34,594][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,634][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_peak_enrichment_quality_metric/bLJnWBw_SbiXDEQ_Jq0A7g] create_mapping [atac_peak_enrichment_quality_metric]
[2020-01-09T11:30:34,641][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_library_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,729][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_library_quality_metric/RY5yanOMTuu2sMxxFNliGw] create_mapping [chip_library_quality_metric]
[2020-01-09T11:30:34,736][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [publication_data] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,780][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [publication_data/7I-MhiujQeeOr9I4avJpNQ] create_mapping [publication_data]
[2020-01-09T11:30:34,789][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,829][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment/eywEPAswRE2eBWoTiQgRAA] create_mapping [treatment]
[2020-01-09T11:30:34,837][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [genetic_modification_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,887][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [genetic_modification_characterization/IZC0mJPxRRm5QlNLugXp3A] create_mapping [genetic_modification_characterization]
[2020-01-09T11:30:34,896][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [access_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,936][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [access_key/gKpjhQqAQgmu1eDcEV8P_g] create_mapping [access_key]
[2020-01-09T11:30:34,944][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,983][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_replication_quality_metric/2FWUkeYUSiaTgEfTy5sgpw] create_mapping [chip_replication_quality_metric]
[2020-01-09T11:30:34,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [cart] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,030][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [cart/NTCEDzpdS6uj2iOCnHO5FA] create_mapping [cart]
[2020-01-09T11:30:35,037][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [filtering_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,081][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [filtering_quality_metric/xcgkpBRkT_CTmQ-sp_nHJA] create_mapping [filtering_quality_metric]
[2020-01-09T11:30:35,089][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [worm_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,132][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [worm_donor/0S3faWQPRdqnKrpx1Mc9yQ] create_mapping [worm_donor]
[2020-01-09T11:30:35,142][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [user] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,182][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [user/yxpJIAjcT8SbE31Nf29W2A] create_mapping [user]
[2020-01-09T11:30:35,190][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_link_target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,230][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_link_target/vMgiXuNlTFq7u6bQDDcqAw] create_mapping [testing_link_target]
[2020-01-09T11:30:35,238][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [long_read_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,278][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [long_read_rna_quantification_quality_metric/LJtMMrMwS4WNerywGbVvyA] create_mapping [long_read_rna_quantification_quality_metric]
[2020-01-09T11:30:35,285][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene_type_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,388][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene_type_quantification_quality_metric/vcwPC0F_R5m-X5Lhlk6FvQ] create_mapping [gene_type_quantification_quality_metric]
[2020-01-09T11:30:35,396][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [histone_chipseq_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,437][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [histone_chipseq_quality_metric/ob7v5ZwzTlCKLJvEMohQJw] create_mapping [histone_chipseq_quality_metric]
[2020-01-09T11:30:35,449][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [organism_development_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,533][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [organism_development_series/CiW_5NmiSEaLc58ZU7GYWQ] create_mapping [organism_development_series]
[2020-01-09T11:30:35,565][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [platform] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,610][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [platform/hXXIAFE8Q4mcsxZ47b33Rg] create_mapping [platform]
[2020-01-09T11:30:35,617][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_download] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,659][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_download/B6JGxsKORDqpCTt7wKKt_Q] create_mapping [testing_download]
[2020-01-09T11:30:35,671][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [functional_characterization_experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,740][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [functional_characterization_experiment/Y-gAjfTMT-ODelhCYkloWw] create_mapping [functional_characterization_experiment]
[2020-01-09T11:30:35,763][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [bismark_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,810][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [bismark_quality_metric/q-JF3FOFTbGPZ9pH5B-3Og] create_mapping [bismark_quality_metric]
[2020-01-09T11:30:35,818][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,862][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_alignment_enrichment_quality_metric/0UwU5b4SRyKgCgV5wsZmyA] create_mapping [chip_alignment_enrichment_quality_metric]
[2020-01-09T11:30:35,871][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,916][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene_quantification_quality_metric/YQeEyz0RS2GvApVGbPmAoQ] create_mapping [gene_quantification_quality_metric]
[2020-01-09T11:30:35,923][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [complexity_xcorr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,966][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [complexity_xcorr_quality_metric/o4OnpLoUROGJDtfg6nBAQA] create_mapping [complexity_xcorr_quality_metric]
[2020-01-09T11:30:35,978][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [matched_set] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,057][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [matched_set/3WGg1HRgS4-OGosutdbVzA] create_mapping [matched_set]
[2020-01-09T11:30:36,093][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [lab] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,148][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [lab/ukFxX4dnQi-oknDoQLkrOA] create_mapping [lab]
[2020-01-09T11:30:36,157][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_link_source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,205][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_link_source/er8FsifpRYCTtvk59-Sswg] create_mapping [testing_link_source]
[2020-01-09T11:30:36,218][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [aggregate_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,325][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [aggregate_series/Qzo26tKIT7W9K7uq93cZ9g] create_mapping [aggregate_series]
[2020-01-09T11:30:36,351][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [software] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,397][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [software/EG7ZlVuUQ5ee5qcpbDpg9Q] create_mapping [software]
[2020-01-09T11:30:36,411][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [single_cell_rna_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,490][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [single_cell_rna_series/84Z38bQVR46RXTMtbUHkIA] create_mapping [single_cell_rna_series]
[2020-01-09T11:30:36,515][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [pipeline] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,575][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [pipeline/Ixv27V0yT96Hw_2K0eUfYA] create_mapping [pipeline]
[2020-01-09T11:30:36,587][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,644][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_alignment_enrichment_quality_metric/8PNWwcruQK2CPkmYBeq5JA] create_mapping [atac_alignment_enrichment_quality_metric]
[2020-01-09T11:30:36,652][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step_run] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,702][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step_run/_6PRQMdQQbCAqbYjd3booA] create_mapping [analysis_step_run]
[2020-01-09T11:30:36,709][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [micro_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,759][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [micro_rna_mapping_quality_metric/qZS8YTU6TZexNydv3Q6wYg] create_mapping [micro_rna_mapping_quality_metric]
[2020-01-09T11:30:36,767][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [edwbamstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,825][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [edwbamstats_quality_metric/LRhoDBn3RdurAXYznTatig] create_mapping [edwbamstats_quality_metric]
[2020-01-09T11:30:36,837][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment_concentration_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,926][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment_concentration_series/SElqHarySz27-P9yiIe4jQ] create_mapping [treatment_concentration_series]
[2020-01-09T11:30:36,951][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,004][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [source/0vBzer5nQKC_adjbb5IEdQ] create_mapping [source]
[2020-01-09T11:30:37,012][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [duplicates_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,062][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [duplicates_quality_metric/Xb5UQN1vSryXsRp9gZaRAg] create_mapping [duplicates_quality_metric]
[2020-01-09T11:30:37,070][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [idr_summary_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,123][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [idr_summary_quality_metric/KSrdYCMmRnivvWAvgabd8Q] create_mapping [idr_summary_quality_metric]
[2020-01-09T11:30:37,131][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_alignment_samstat_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,185][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_alignment_samstat_quality_metric/_0RRa18sSjW01htxzqN6TQ] create_mapping [chip_alignment_samstat_quality_metric]
[2020-01-09T11:30:37,192][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [publication] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,250][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [publication/VIq0Vkq8QVSiw0MfXN6UIQ] create_mapping [publication]
[2020-01-09T11:30:37,259][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [page] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,319][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [page/mzJ-vcYvS6Kj7VrBnAb4EQ] create_mapping [page]
[2020-01-09T11:30:37,327][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,387][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step/vo88D3Y1QniCUxx1aewBVw] create_mapping [analysis_step]
[2020-01-09T11:30:37,395][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_server_default] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,450][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_server_default/zGgJzfqfRDiPAImySQLCPA] create_mapping [testing_server_default]
[2020-01-09T11:30:37,465][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [replication_timing_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,556][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [replication_timing_series/AOH5xZ27QDuAmOhxYzPHBw] create_mapping [replication_timing_series]
[2020-01-09T11:30:37,602][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_alignment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,660][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_alignment_quality_metric/JoxDQFCVRLqpNWEAxbxovw] create_mapping [atac_alignment_quality_metric]
[2020-01-09T11:30:37,673][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [reference_epigenome] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,782][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [reference_epigenome/I0o9om7EQFi5-EAR-L0XJQ] create_mapping [reference_epigenome]
[2020-01-09T11:30:37,811][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [cpg_correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,868][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [cpg_correlation_quality_metric/zCPMHOCaQxmzzObDTA7Q4A] create_mapping [cpg_correlation_quality_metric]
[2020-01-09T11:30:37,878][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [ucsc_browser_composite] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,946][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [ucsc_browser_composite/1V04SGj1SEyKzt4cG0hanA] create_mapping [ucsc_browser_composite]
[2020-01-09T11:30:37,958][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [star_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,009][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [star_quality_metric/9VfOSDbsTE6kMQjdv9l0Zw] create_mapping [star_quality_metric]
[2020-01-09T11:30:38,016][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [trimming_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,067][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [trimming_quality_metric/rJzY8Xp8QLKDUFBzjoYnsA] create_mapping [trimming_quality_metric]
[2020-01-09T11:30:38,078][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [reference] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,135][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [reference/x_OLI1YvT8SJO3C7-kOjoA] create_mapping [reference]
[2020-01-09T11:30:38,147][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_library_complexity_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,198][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_library_complexity_quality_metric/m-hqXtKiT42GJsaLjBlZKA] create_mapping [atac_library_complexity_quality_metric]
[2020-01-09T11:30:38,206][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [replicate] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,261][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [replicate/3fIgF3-qQv2vhVjq18ru7w] create_mapping [replicate]
[2020-01-09T11:30:38,270][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,321][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [correlation_quality_metric/e5m6qR96RNGWQ45UNdNT-Q] create_mapping [correlation_quality_metric]
[2020-01-09T11:30:38,329][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [micro_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,380][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [micro_rna_quantification_quality_metric/XzFPOeznS2-HkuXct17pjA] create_mapping [micro_rna_quantification_quality_metric]
[2020-01-09T11:30:38,387][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [donor_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,450][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [donor_characterization/H1d3IuLTTiiIujHXTVUumw] create_mapping [donor_characterization]
[2020-01-09T11:30:38,458][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,506][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [target/B3SDvPtSSxqpAi-SvQZtPg] create_mapping [target]
[2020-01-09T11:30:38,513][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [organism] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,564][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [organism/m9Ekr2ILQDqBzsq152fUig] create_mapping [organism]
[2020-01-09T11:30:38,571][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,622][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene/tAGOUcURRLGHldrX-xL25A] create_mapping [gene]
[2020-01-09T11:30:38,630][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [mouse_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,684][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [mouse_donor/isyeuOseQz63ZX_QQPKydQ] create_mapping [mouse_donor]
[2020-01-09T11:30:38,693][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [samtools_flagstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,743][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [samtools_flagstats_quality_metric/tSkowhrrSO-m_ZAFr0AdxQ] create_mapping [samtools_flagstats_quality_metric]
[2020-01-09T11:30:38,752][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [file] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,813][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [file/i4MQ3QFgQjKH957Ou53GrQ] create_mapping [file]
[2020-01-09T11:30:38,827][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [genetic_modification] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,882][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [genetic_modification/e9YkrlxKQl-cZUHvdG33-Q] create_mapping [genetic_modification]
[2020-01-09T11:30:38,893][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [idr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,946][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [idr_quality_metric/-rx5x2x5Qai2UOoeX6YwDg] create_mapping [idr_quality_metric]
[2020-01-09T11:30:38,955][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [long_read_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,018][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [long_read_rna_mapping_quality_metric/AAJa-_QvSuSx84WF9G8FaQ] create_mapping [long_read_rna_mapping_quality_metric]
[2020-01-09T11:30:39,025][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [mad_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,082][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [mad_quality_metric/OKgrdDN_QjiL5oKwkhmo5g] create_mapping [mad_quality_metric]
[2020-01-09T11:30:39,091][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [fly_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,146][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [fly_donor/25iHsXDzQZq_bBHO_Ofxjg] create_mapping [fly_donor]
[2020-01-09T11:30:39,155][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [software_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,208][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [software_version/TqI7W9QNSjmFmlA4zzv5zg] create_mapping [software_version]
[2020-01-09T11:30:39,216][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [antibody_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,274][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [antibody_characterization/hcNaHvuVQyupAmuVZgSS1Q] create_mapping [antibody_characterization]
[2020-01-09T11:30:39,283][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chipseq_filter_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,339][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chipseq_filter_quality_metric/oc4xf1LeT5mWlXVtv_O18A] create_mapping [chipseq_filter_quality_metric]
[2020-01-09T11:30:39,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_post_put_patch] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,402][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_post_put_patch/516240X4S0qvoRHuJYCl7g] create_mapping [testing_post_put_patch]
[2020-01-09T11:30:39,413][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [project] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,481][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [project/G9e5RHTzSmSX6dgpVppu3A] create_mapping [project]
[2020-01-09T11:30:39,493][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,551][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step_version/8-pKlScwSXS94276e5O5Ug] create_mapping [analysis_step_version]
[2020-01-09T11:30:39,559][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,617][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_key/qUDGAFIJSGijqgyp65JJTw] create_mapping [testing_key]
[2020-01-09T11:30:39,624][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,681][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample_characterization/ZUT0uqZjS1ShaBUnBJ1YCA] create_mapping [biosample_characterization]`
skotechaeng commented 4 years ago

Thanks. Here is mine. Not sure if this is normal.

encoded@datanav-demo:~/encoded$ bin/dev-servers development.ini --app-name app --clear --init --load The files belonging to this database system will be owned by user "encoded". This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8". The default database encoding has accordingly been set to "UTF8". The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok creating subdirectories ... ok selecting default max_connections ... 100 selecting default shared_buffers ... 128MB creating configuration files ... ok creating template1 database in /tmp/snovault/pgdata/base/1 ... ok initializing pg_authid ... ok initializing dependencies ... ok creating system views ... ok loading system objects' descriptions ... ok creating collations ... ok creating conversions ... ok creating dictionaries ... ok setting privileges on built-in objects ... ok creating information schema ... ok loading PL/pgSQL server-side language ... ok vacuuming database template1 ... ok copying template1 to template0 ... ok copying template1 to postgres ... ok syncing data to disk ... ok

Success. You can now start the database server using:

postgres -D /tmp/snovault/pgdata

or pg_ctl -D /tmp/snovault/pgdata -l logfile start

LOG: database system was shut down at 2020-01-09 20:18:24 UTC LOG: MultiXact member wraparound protections are now enabled LOG: autovacuum launcher started LOG: database system is ready to accept connections Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata NOT IN TRAVIS ['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf'] [2020-01-09T20:18:27,190][INFO ][o.e.n.Node ] [] initializing ... [2020-01-09T20:18:27,292][INFO ][o.e.e.NodeEnvironment ] [t7XuQXi] using [1] data paths, mounts [[/ (/dev/sda1)]], net usable_space [24.8gb], net total_space [29.4gb], spins? [possibly], types [ext4] [2020-01-09T20:18:27,292][INFO ][o.e.e.NodeEnvironment ] [t7XuQXi] heap size [6.9gb], compressed ordinary object pointers [true] [2020-01-09T20:18:27,294][INFO ][o.e.n.Node ] node name [t7XuQXi] derived from node ID [t7XuQXihRdWuwt7xM5DE4g]; set [node.name] to override [2020-01-09T20:18:27,295][INFO ][o.e.n.Node ] version[5.6.3], pid[7319], build[1a2f265/2017-10-06T20:33:39.012Z], OS[Linux/4.4.0-148-generic/amd64], JVM[Private Build/OpenJDK 64-Bit Server VM/1.8.0_222/25.222-b10] [2020-01-09T20:18:27,295][INFO ][o.e.n.Node ] JVM arguments [-Des.path.home=/usr/share/elasticsearch] [2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [aggs-matrix-stats] [2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [ingest-common] [2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-expression] [2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-groovy] [2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-mustache] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-painless] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [parent-join] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [percolator] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [reindex] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [transport-netty3] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [transport-netty4] [2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] no plugins loaded [2020-01-09T20:18:29,774][INFO ][o.e.d.DiscoveryModule ] [t7XuQXi] using discovery type [single-node] [2020-01-09T20:18:30,282][INFO ][o.e.n.Node ] initialized [2020-01-09T20:18:30,282][INFO ][o.e.n.Node ] [t7XuQXi] starting ... [2020-01-09T20:18:30,316][INFO ][i.n.u.i.PlatformDependent] Your platform does not provide complete low-level API for accessing direct buffers reliably. Unless explicitly requested, heap buffer will always be preferred to avoid potential system instability. [2020-01-09T20:18:30,426][INFO ][o.e.t.TransportService ] [t7XuQXi] publish_address {127.0.0.1:9300}, bound_addresses {127.0.0.1:9300} [2020-01-09T20:18:30,438][WARN ][o.e.b.BootstrapChecks ] [t7XuQXi] initial heap size [528482304] not equal to maximum heap size [8430551040]; this can cause resize pauses and prevents mlockall from locking the entire heap [2020-01-09T20:18:30,455][INFO ][o.e.c.s.ClusterService ] [t7XuQXi] new_master {t7XuQXi}{t7XuQXihRdWuwt7xM5DE4g}{Lx_wxG7DSYOdHFX9UKNzCQ}{127.0.0.1}{127.0.0.1:9300}, reason: single-node-start-initial-join[{t7XuQXi}{t7XuQXihRdWuwt7xM5DE4g}{Lx_wxG7DSYOdHFX9UKNzCQ}{127.0.0.1}{127.0.0.1:9300}] [2020-01-09T20:18:30,481][INFO ][o.e.h.n.Netty4HttpServerTransport] [t7XuQXi] publish_address {127.0.0.1:9201}, bound_addresses {127.0.0.1:9201} [2020-01-09T20:18:30,481][INFO ][o.e.n.Node ] [t7XuQXi] started detected start, broke returning process Started: http://localhost:8000 CREATE MAPPING RUNNING INFO:encoded:Loaded 77 of 77 user (phase 1). CREATED: 77, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 19 of 19 award (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 33 of 33 lab (phase 1). CREATED: 33, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 23 of 23 organism (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 23 of 23 source (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 51 of 51 gene (phase 1). CREATED: 51, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 31 of 31 target (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 28 of 28 publication (phase 1). CREATED: 28, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 37 of 37 document (phase 1). CREATED: 37, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 19 of 19 antibody_lot (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 31 of 31 biosample_type (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 24 of 24 antibody_characterization (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 13 of 13 treatment (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 7 of 7 mouse_donor (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 3 of 3 fly_donor (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 worm_donor (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 13 of 13 human_donor (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 donor_characterization (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 11 of 11 genetic_modification (phase 1). CREATED: 11, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 genetic_modification_characterization (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 54 of 54 biosample (phase 1). CREATED: 54, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 biosample_characterization (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 14 of 14 platform (phase 1). CREATED: 14, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 60 of 60 library (phase 1). CREATED: 60, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 52 of 52 experiment (phase 1). CREATED: 52, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 5 of 5 functional_characterization_experiment (phase 1). CREATED: 5, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 72 of 72 replicate (phase 1). CREATED: 72, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 8 of 8 annotation (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 project (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 publication_data (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 8 of 8 reference (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 ucsc_browser_composite (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 matched_set (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 organism_development_series (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 aggregate_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 3 of 3 experiment_series (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 26 of 26 software (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 26 of 26 software_version (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 30 of 30 analysis_step (phase 1). CREATED: 30, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 24 of 24 analysis_step_version (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 12 of 12 pipeline (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 12 of 12 analysis_step_run (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 143 of 143 file (phase 1). CREATED: 143, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 star_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 gene_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 gene_type_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 bismark_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 cpg_correlation_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 atac_alignment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 atac_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 atac_library_complexity_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 atac_peak_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 atac_replication_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 chip_alignment_samstat_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 chip_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 chip_library_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 chip_peak_enrichment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 chip_replication_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 chipseq_filter_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 micro_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 micro_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 long_read_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 long_read_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 samtools_flagstats_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 mad_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 3 of 3 correlation_quality_metric (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 edwbamstats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 hotspot_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 idr_summary_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 complexity_xcorr_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 duplicates_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 filtering_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 trimming_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 samtools_stats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 idr_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 histone_chipseq_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 8 of 8 generic_quality_metric (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 gencode_category_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 7 of 7 image (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 36 of 36 page (phase 1). CREATED: 36, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 cart (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 access_key (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 77 of 77 user (phase 2). CREATED: 0, UPDATED: 77, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 publication (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 0 of 0 treatment (phase 2). CREATED: 0, UPDATED: 0, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 mouse_donor (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 fly_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 worm_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 human_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 biosample (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 3 of 3 library (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 11 of 11 experiment (phase 2). CREATED: 0, UPDATED: 11, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 3 of 3 functional_characterization_experiment (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 7 of 7 annotation (phase 2). CREATED: 0, UPDATED: 7, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 project (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 publication_data (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 reference (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 ucsc_browser_composite (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 matched_set (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 2 of 2 organism_development_series (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 1 of 1 aggregate_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 2). CREATED: 0, UPDATED: 4, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 12 of 12 analysis_step (phase 2). CREATED: 0, UPDATED: 12, SKIPPED: 0, ERRORS: 0 INFO:encoded:Loaded 39 of 39 file (phase 2). CREATED: 0, UPDATED: 39, SKIPPED: 0, ERRORS: 0 Started. ^C to exit. [2020-01-09T20:18:30,514][INFO ][o.e.g.GatewayService ] [t7XuQXi] recovered [0] indices into cluster_state [2020-01-09T20:18:33,740][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [snovault] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:34,185][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [snovault/D8IyM5KfR9OKhKbDenSl0A] create_mapping [meta] [2020-01-09T20:18:34,230][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [reference] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:34,653][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [reference/j5pij7-hSp2coYaWbzrNxA] create_mapping [reference] [2020-01-09T20:18:34,720][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [organism] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:35,026][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [organism/RL_2-hkxSUOCTmbE9AKDRg] create_mapping [organism] [2020-01-09T20:18:35,062][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [generic_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:35,342][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [generic_quality_metric/8GBKkuNtSwaR8IPqxUA5SA] create_mapping [generic_quality_metric] [2020-01-09T20:18:35,374][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [bismark_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:35,665][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [bismark_quality_metric/oe8v3BqpTB6Pne1ZvDZcsA] create_mapping [bismark_quality_metric] [2020-01-09T20:18:35,694][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [target] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:35,978][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [target/9KcwyzQXQoeAyjxFtmp0ng] create_mapping [target] [2020-01-09T20:18:36,009][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:36,304][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample_characterization/sAPkEQaNTTGRPy39EqPkew] create_mapping [biosample_characterization] [2020-01-09T20:18:36,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_server_default] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:36,638][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_server_default/4sJzGDzcRZGjCRAqJL4sQQ] create_mapping [testing_server_default] [2020-01-09T20:18:36,676][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [project] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:37,025][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [project/APtKQDKzRtyt3eyaB60UMw] create_mapping [project] [2020-01-09T20:18:37,100][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [replication_timing_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:37,525][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [replication_timing_series/a1eeHYtgRla4ZOBTknUKGA] create_mapping [replication_timing_series] [2020-01-09T20:18:37,613][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [ucsc_browser_composite] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:37,912][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [ucsc_browser_composite/GngdD1mDTpaZDAtK1xgXGg] create_mapping [ucsc_browsercomposite] [2020-01-09T20:18:37,954][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [publication] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:38,226][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [publication/-bf2akjXQ2e-ZEBbtHO_A] create_mapping [publication] [2020-01-09T20:18:38,267][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [aggregate_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:38,678][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [aggregate_series/_qkPdbmPSEeo3013OxpEdw] create_mapping [aggregate_series] [2020-01-09T20:18:38,806][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [filtering_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:39,088][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [filtering_quality_metric/LBIo4HJgQbqGx1oFr9nzXw] create_mapping [filtering_quality_metric] [2020-01-09T20:18:39,115][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [genetic_modification] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:39,425][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [genetic_modification/u5kcMGgCSDaNxUILZXNMPg] create_mapping [genetic_modification] [2020-01-09T20:18:39,466][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [file] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:39,774][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [file/GnonPC4kRHebK_mAZ-rR5Q] create_mapping [file] [2020-01-09T20:18:39,817][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [micro_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:40,127][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [micro_rna_mapping_quality_metric/KOBihkfwS8OeY_yT6zZxJA] create_mapping [micro_rna_mapping_quality_metric] [2020-01-09T20:18:40,170][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample_type] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:40,472][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample_type/MqRe8L27Q86J2UYTQqQtXg] create_mapping [biosample_type] [2020-01-09T20:18:40,506][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [fly_donor] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:40,829][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [fly_donor/oU7Hzfg6Tny8Yp_YnUWbOQ] create_mapping [fly_donor] [2020-01-09T20:18:40,859][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [award] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:41,195][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [award/rQmNhIXaRhOUMO2H-stAIw] create_mapping [award] [2020-01-09T20:18:41,228][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [micro_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:41,553][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [micro_rna_quantification_quality_metric/3KbeIUBNSgKeL0qk_3VODg] create_mapping [micro_rna_quantification_quality_metric] [2020-01-09T20:18:41,595][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:41,960][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample/bNlOaBG1S9CtnsijFyzYSg] create_mapping [biosample] [2020-01-09T20:18:42,020][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:42,360][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_peak_enrichment_quality_metric/gGPj2cCvSRG3bC1NWUM97A] create_mapping [chip_peak_enrichment_quality_metric] [2020-01-09T20:18:42,392][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:42,709][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene_quantification_quality_metric/9z2VW9FrTECu-CUPyE0e5w] create_mapping [gene_quantification_quality_metric] [2020-01-09T20:18:42,734][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [antibody_lot] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:43,137][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [antibody_lot/aKQlPzhfQ3CxKcauybxz3Q] create_mapping [antibody_lot] [2020-01-09T20:18:43,187][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [software_version] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:43,541][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [software_version/gN4FM6Z5TYWkkrRAs2gUGQ] create_mapping [software_version] [2020-01-09T20:18:43,580][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [publication_data] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:43,927][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [publication_data/gwnZPSvAQsagZ1VpWUoUTw] create_mapping [publication_data] [2020-01-09T20:18:43,961][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_link_target] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:44,278][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_link_target/lwNl8E1mRiG1rgO2NqaHMA] create_mapping [testing_link_target] [2020-01-09T20:18:44,314][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gencode_category_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:44,722][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gencode_category_quality_metric/LdTGnhQLStK1Jv4UKzGmpg] create_mapping [gencode_category_quality_metric] [2020-01-09T20:18:44,764][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment_concentration_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:45,307][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment_concentration_series/0bXrhL9lSKukKUsOuVIYNA] create_mapping [treatment_concentration_series] [2020-01-09T20:18:45,374][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chipseq_filter_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:45,750][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chipseq_filter_quality_metric/OZGbZnvwR9SCJEobgLEVCw] create_mapping [chipseq_filter_quality_metric] [2020-01-09T20:18:45,788][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [user] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:46,077][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [user/lxnDzb9fSGSPtkhK3d94AQ] create_mapping [user] [2020-01-09T20:18:46,107][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [experiment_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:46,398][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [experiment_series/nPNpk1u9TduFt-insEMa9w] create_mapping [experiment_series] [2020-01-09T20:18:46,430][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [mouse_donor] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:46,701][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [mouse_donor/mHOOtinoQXOx_b5psQ4WQg] create_mapping [mouse_donor] [2020-01-09T20:18:46,730][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [pipeline] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:47,003][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [pipeline/uhhocSswQh2gpv98vTFsjg] create_mapping [pipeline] [2020-01-09T20:18:47,034][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:47,302][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_replication_quality_metric/ZX_8ln96T-q6yR54awwMRA] create_mapping [atac_replication_quality_metric] [2020-01-09T20:18:47,336][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [genetic_modification_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:47,610][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [genetic_modification_characterization/1fj-Cq-oQ1qbgyOO50YcNQ] create_mapping [genetic_modification_characterization] [2020-01-09T20:18:47,637][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [antibody_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:47,908][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [antibody_characterization/qh6qPmQESCCumxz3EIMqpg] create_mapping [antibody_characterization] [2020-01-09T20:18:47,934][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_link_source] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:48,214][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_link_source/0U8gwk_xSbSwp2WYmURYYA] create_mapping [testing_link_source] [2020-01-09T20:18:48,239][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_post_put_patch] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:48,518][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_post_put_patch/b4UKfQtDSJql_JoIUim5QQ] create_mapping [testing_post_put_patch] [2020-01-09T20:18:48,543][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:48,848][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment/53baB_ShRzu0iBZW1nusuA] create_mapping [treatment] [2020-01-09T20:18:48,873][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [idr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:49,153][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [idr_quality_metric/3z8Oaa-aSwOB-lHGQ1pHrA] create_mapping [idr_quality_metric] [2020-01-09T20:18:49,182][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [star_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:49,458][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [star_quality_metric/9uSsZkCcQHCxjj8JdYLbqA] create_mapping [star_quality_metric] [2020-01-09T20:18:49,484][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:49,751][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [correlation_quality_metric/OgEoBThrRmGuh44njjlfCA] create_mapping [correlation_quality_metric] [2020-01-09T20:18:49,778][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [mad_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:50,045][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [mad_quality_metric/paEpDxiCRliuNANzDoHuOA] create_mapping [mad_quality_metric] [2020-01-09T20:18:50,071][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step_version] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:50,345][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step_version/5jqx59IuT9ifuOvhsXr67Q] create_mapping [analysis_step_version] [2020-01-09T20:18:50,379][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment_time_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:50,705][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment_time_series/wvV6JjkfQbGkNrBraDNOdA] create_mapping [treatment_time_series] [2020-01-09T20:18:50,762][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [long_read_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:51,039][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [long_read_rna_mapping_quality_metric/O20YnH7zSy-Wr54Qr0cS5w] create_mapping [long_read_rna_mapping_quality_metric] [2020-01-09T20:18:51,064][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [library] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:51,337][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [library/sWtXp7vURkOKo2ZmB-CnTA] create_mapping [library] [2020-01-09T20:18:51,365][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [samtools_flagstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:51,630][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [samtools_flagstats_quality_metric/0eGZhq8hRHSIOQQMHuVE7w] create_mapping [samtools_flagstats_quality_metric] [2020-01-09T20:18:51,655][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:52,010][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_alignment_enrichment_quality_metric/pI0Dp7tXRxCHG9odozvf7w] create_mapping [chip_alignment_enrichment_quality_metric] [2020-01-09T20:18:52,041][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_key] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:52,377][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_key/AtGIQTTYSiqzKE7YRtezRQ] create_mapping [testing_key] [2020-01-09T20:18:52,410][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [replicate] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:52,797][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [replicate/BfgIeb6TRxWjIEoGxkz_ow] create_mapping [replicate] [2020-01-09T20:18:52,831][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [source] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:53,204][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [source/Sdb1COUySSu1nG8fZFZeAg] create_mapping [source] [2020-01-09T20:18:53,241][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [annotation] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:53,631][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [annotation/EPI3qeEyRKSvn4GOPQkeLQ] create_mapping [annotation] [2020-01-09T20:18:53,690][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [reference_epigenome] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:54,067][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [reference_epigenome/7AgaHs-bTSy4Jkm2sGm5vQ] create_mapping [reference_epigenome] [2020-01-09T20:18:54,123][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [complexity_xcorr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:54,468][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [complexity_xcorr_quality_metric/zBY8zJEjRQ-kK8B5WcRhnA] create_mapping [complexity_xcorr_quality_metric] [2020-01-09T20:18:54,511][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [functional_characterization_experiment] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:54,871][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [functional_characterization_experiment/BpEtF1lDQ6qnzCOZDXBAQw] create_mapping [functional_characterization_experiment] [2020-01-09T20:18:54,918][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:55,282][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step/8tloKwU5TmKS3Tblq4tjoA] create_mapping [analysis_step] [2020-01-09T20:18:55,312][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [edwbamstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:55,681][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [edwbamstats_quality_metric/ErECbypzRL-6pZuqpPipyg] create_mapping [edwbamstats_quality_metric] [2020-01-09T20:18:55,711][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [hotspot_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:56,073][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [hotspot_quality_metric/hMQWmj1eQrKTJZzYdUwurA] create_mapping [hotspot_quality_metric] [2020-01-09T20:18:56,114][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [human_donor] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:56,466][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [human_donor/yUg9iUBXR8WLUtT2f1g1Fg] create_mapping [human_donor] [2020-01-09T20:18:56,500][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_library_complexity_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:56,857][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_library_complexity_quality_metric/jtBcK3FQQLyNs0Pjrfmq2g] create_mapping [atac_library_complexity_quality_metric] [2020-01-09T20:18:56,889][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:57,239][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_replication_quality_metric/ztmZIOwFQO6Hld3zv6IEVg] create_mapping [chip_replication_quality_metric] [2020-01-09T20:18:57,292][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [trimming_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:57,673][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [trimming_quality_metric/DInXC965RIKaiMHFBafw6g] create_mapping [trimming_quality_metric] [2020-01-09T20:18:57,704][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [worm_donor] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:58,064][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [worm_donor/5i6vlcj3SPOovJdWw1rHLQ] create_mapping [worm_donor] [2020-01-09T20:18:58,091][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:58,476][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene/iMXC7f3UQluU-1CUKfywbQ] create_mapping [gene] [2020-01-09T20:18:58,517][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [single_cell_rna_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:58,934][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [single_cell_rna_series/pTF5hHQ1QlGScx5SvtcuJw] create_mapping [single_cell_rna_series] [2020-01-09T20:18:58,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [organism_development_series] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:59,399][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [organism_development_series/oicWDaHvQgKV9CS1l9w9cQ] create_mapping [organism_development_series] [2020-01-09T20:18:59,469][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [duplicates_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:18:59,839][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [duplicates_quality_metric/C9dUqK-YQ0KHgGn8oVQlhA] create_mapping [duplicates_quality_metric] [2020-01-09T20:18:59,873][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_dependencies] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:00,255][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_dependencies/Jec0J19bSMeIAhp407Alag] create_mapping [testing_dependencies] [2020-01-09T20:19:00,288][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:00,676][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_peak_enrichment_quality_metric/YvebC1YVS2yp6las31pPmA] create_mapping [atac_peak_enrichment_quality_metric] [2020-01-09T20:19:00,721][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [page] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:01,096][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [page/-Bl9C9rbTf6Q4_FPxCp7uw] create_mapping [page] [2020-01-09T20:19:01,140][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_alignment_samstat_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:01,511][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_alignment_samstat_quality_metric/K_Tg67eyTpqrcwNcNZWKAw] create_mapping [chip_alignment_samstat_quality_metric] [2020-01-09T20:19:01,549][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [access_key] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:01,934][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [access_key/GrY4XrbcQdqfN-4692FnMw] create_mapping [access_key] [2020-01-09T20:19:01,968][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [cpg_correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:02,316][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [cpg_correlation_quality_metric/SagYJfP8TauB2H0bEUcVLA] create_mapping [cpg_correlation_quality_metric] [2020-01-09T20:19:02,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [lab] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:02,730][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [lab/V4a7Xu_xRWSqa2SIXIFfAw] create_mapping [lab] [2020-01-09T20:19:02,765][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [long_read_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:03,159][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [long_read_rna_quantification_quality_metric/8jFpMHl3Q0i1irpEiGyf1g] create_mapping [long_read_rna_quantification_quality_metric] [2020-01-09T20:19:03,188][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [samtools_stats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:03,511][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [samtools_stats_quality_metric/tK3r1dP7T52eWJ4KGwBihg] create_mapping [samtools_stats_quality_metric] [2020-01-09T20:19:03,550][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [donor_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:03,905][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [donor_characterization/PSDw9sOjT922jYIL6hO6Xg] create_mapping [donor_characterization] [2020-01-09T20:19:03,940][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step_run] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:04,323][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step_run/Qw-5GZf9Ruq5ehSgKWfS3Q] create_mapping [analysis_step_run] [2020-01-09T20:19:04,360][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:04,705][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_alignment_enrichment_quality_metric/bjhULIX6S7Kzg-UlquNnnw] create_mapping [atac_alignment_enrichment_quality_metric] [2020-01-09T20:19:04,736][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_alignment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:05,089][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_alignment_quality_metric/XeuqvSQURsy8nmOSffw3IA] create_mapping [atac_alignment_quality_metric] [2020-01-09T20:19:05,112][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [platform] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:05,481][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [platform/b3ej38H8QpOQOZyW-WOxlg] create_mapping [platform] [2020-01-09T20:19:05,505][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [image] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:05,867][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [image/-Mk5dCuCSG-Si0nRFy0QrQ] create_mapping [image] [2020-01-09T20:19:05,992][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_download] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:06,363][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_download/lvQVshWJQnuZJikZfZASrg] create_mapping [testing_download] [2020-01-09T20:19:06,386][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [document] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:06,734][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [document/rtuKrcXlSbGoeGa_9vlj-A] create_mapping [document] [2020-01-09T20:19:06,764][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [histone_chipseq_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:07,139][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [histone_chipseq_quality_metric/M90d6dUxReOJyV6dX1EN4w] create_mapping [histone_chipseq_quality_metric] [2020-01-09T20:19:07,168][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_library_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:07,584][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_library_quality_metric/nDL37iQDQ8mMZ1XBWRYXgA] create_mapping [chip_library_quality_metric] [2020-01-09T20:19:07,629][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [experiment] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:08,036][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [experiment/w6Rk1930TBKj_tuHcmlJ-A] create_mapping [experiment] [2020-01-09T20:19:08,104][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [matched_set] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:08,510][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [matched_set/-xDMyqadSc6N7NZwgsa48A] create_mapping [matched_set] [2020-01-09T20:19:08,588][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [software] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:08,958][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [software/9tZO89VhRJ2c51uo2lblvw] create_mapping [software] [2020-01-09T20:19:08,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [idr_summary_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:09,362][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [idr_summary_quality_metric/LVs-BLlzS4Soo4lbe0k2NA] create_mapping [idr_summary_quality_metric] [2020-01-09T20:19:09,391][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [test-encode-item] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:09,722][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [test-encode-item/2xBGtgqTQs2OofVhqNkz7w] create_mapping [test-encode-item] [2020-01-09T20:19:09,748][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene_type_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:10,082][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene_type_quantification_quality_metric/spMD_OW8Rmyrjv6fSl23Vg] create_mapping [gene_type_quantification_quality_metric] [2020-01-09T20:19:10,107][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [cart] creating index, cause [api], templates [], shards [5]/[2], mappings [] [2020-01-09T20:19:10,495][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [cart/IKmgqek6TgOU1UXwYy0n7w] create_mapping [cart]

hitz commented 4 years ago

yeah it's workiing just go in another terminal window and run bin/pserve development.ini

Then navigate to localhost:8000

skotechaeng commented 4 years ago

It works :-). Thanks @hitz and @keenangraham. I'll be working on production next.