search

ENCODE-DCC / rna-seq-pipeline

MIT License
141 stars 62 forks source link

cannot use --singularity #104

Open AlsoATraveler opened 3 weeks ago

AlsoATraveler commented 3 weeks ago

==== NAME=rna.align, STATUS=RetryableFailure, PARENT= SHARD_IDX=0, RC=255, JOB_ID=10962 START=2024-10-31T07:37:19.909Z, END=2024-10-31T07:39:09.152Z STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/execution/stdout STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/execution/stderr STDERR_BACKGROUND_CONTENTS= FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.108.58:443: i/o time FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.108.58:443: i/o time

==== NAME=rna.align, STATUS=Failed, PARENT= SHARD_IDX=0, RC=255, JOB_ID=12977 START=2024-10-31T07:39:53.473Z, END=2024-10-31T07:44:14.536Z STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/attempt-2/execution/stdout STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/attempt-2/execution/stderr STDERR_BACKGROUND_CONTENTS= FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 118.193.202.219:443: i/o ti FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 23.225.141.210:443: i/o tim

==== NAME=rna.align, STATUS=RetryableFailure, PARENT= SHARD_IDX=1, RC=255, JOB_ID=10972 START=2024-10-31T07:37:19.909Z, END=2024-10-31T07:40:04.152Z STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-1/execution/stdout STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-1/execution/stderr STDERR_BACKGROUND_CONTENTS= FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 31.13.91.6:443: i/o timeout FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.

AlsoATraveler commented 3 weeks ago

caper run /xxx/rna-seq-pipeline-dev/rna-seq-pipeline.wdl -i input.json --local-out-dir . --womtool /home/user/.caper/womtool_jar/womtool-82.jar --cromwell /home/user/.caper/cromwell_jar/cromwell-82.jar -b local --singularity