Open westonkjones opened 2 years ago
Hi. I will look into it. Which singularity versions have you tried?
Please run the following for debugging and post outputs.
$ singularity exec encodedcc/rna-seq-pipeline:1.2.4 echo hello
Also, please try with the latest caper>=2.0.0. That will solve most singularity/conda/slurm problems
$ pip install caper --upgrade
Thanks for pitching in @leepc12. @westonkjones let us know how it goes and we'll help you if this does not already resolve your issue. Thanks!
Hello! I'm trying to run the pipeline with the singularity flag, but I get the following error (anonymized for brevity)
When I search for that error there isn't much to go on, but people seem to mention the image was built for the wrong version. I've tried to
module load
few different Singularity versions on my SLURM cluster, but none have worked. This happens when trying to run on the test files, and when I tried with version 1.2.3