ENHANCE-PET / MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
https://enhance.pet
GNU General Public License v3.0
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Bug: Stool/Intestines is misclassified as visceral fat #18

Closed josefyu closed 1 year ago

josefyu commented 2 years ago

The stool has a similar Houndsfield unit to fat. In patients with watery stool, the visceral label segmentation includes the stool. In more constipated patients the differentiation works better. This finding will affect volumetry-based studies (cachexia). A temporary solution will be to use the L3 approach, where only the relevant label segmentations are considered.