Analysis request: MOOSE + PET-Parameter extraction of PCA cohort

[KCHK1234]

Analysis request for prostate cancer cohort as follows:

• [x] MOOSE cohort -> Validation of Segmentations by me
  • [ ] Extract PET-Parameters from MOOSEd Segments
• [x ] Delete all hand drawn PET-Segmentations starting with cubic*
• [ ] Merge all the remaining Segmentations (pb, sv, pln*...) on a patient level by the following convention:
  • [ ] all Segmentations to a Master_VOI -> extract PET-Parameters (SUVmax, mean... + Metabolic Tumor volume)
  • [ ] VOIs named: pb + sv -> _Prostate_SumVOI -> extract PET-Parameters (SUVmax, mean... + Metabolic Tumor volume)
  • [ ] VOIs named: dln + pln + rln* -> _Lymph_node_SumVOI -> extract PET-Parameters (SUVmax, mean... + Metabolic Tumor volume)
  • [ ] VOIs named: bone* -> _Bone_SumVOI -> extract PET-Parameters (SUVmax, mean... + Metabolic Tumor volume)
  • [ ] VOIs named: adrenal + liver + pleura + lung + rectum + skin + peritoneal + org + organ + psoas + testis + lung + cavern* -> _Organ_SumVOI -> extract PET-Parameters (SUVmax, mean... + Metabolic Tumor volume)

[LalithShiyam]

@KCHK1234 Regarding your question, it pretty much depends upon how organised the folder structure is, so that I can just write a script and get the stuff done. So if everything is in place, it would cost me an hour or so.

[KCHK1234]

So 1 hour plus for the more granular version? Or either way?

[LalithShiyam]

Yeah cleaning up part of the folders is the hardest part. I haven't seen completely how messy/structured it is. So hard to tell.

[KCHK1234]

OK, but I can also do that, if you tell me how the structure should be to streamline it most effectively

[LalithShiyam]

@KCHK1234 Yep, I think it's better if you do it. Let me know once it's done. Will run moose on top of it! Once we run it on the PCA cohort, you can actually evaluate how good or bad it is!

[KCHK1234]

Ok, so I updated the segmentation names and the merging conventions. So * ofc is a wildcard since many patients have i.e. Bone_1 to Bone_n.... Thank you buddy!

[LalithShiyam]

@KCHK1234: prostate cancer stuff has been moose'd. I will work on the tumour merge tomorrow (24 Fri, 2022)

[KCHK1234]

supa nice!