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ENHANCE-PET / MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
https://enhance.pet
GNU General Public License v3.0
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BUG: WSL does not have unzip installed and moose falls silently due to wrong installation. #44

Closed paula-m closed 2 years ago

paula-m commented 2 years ago

MOOSE fails with index error when trying to run on WSL, due to wrong installation. There is no moose-files folder created when the algorithm is installed.

Steps to reproduce the behavior: Install through WSL as described in github.

Moose-files folder should be created when installed, and moose should run as required.

Screenshots of the errors: image image

Windows 11 22H2

LalithShiyam commented 2 years ago

Hi @paula-m, thanks for opening the issue. The reason why moose fails is due to the fact that the models are not unzipped before they are deleted. The reason is WSL doesn't have unzip utility preinstalled unlike native ubuntu. The solution for this bug would be to install unzip before moose installation. Once unzip is installed, everything should ideally work.

I am closing this for now, keep me posted, if something else crashes or burns!