ENHANCE-PET / MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
https://enhance.pet
GNU General Public License v3.0
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Feat: Extract volume stats from CT #7

Closed LalithShiyam closed 2 years ago

LalithShiyam commented 2 years ago

The volume of an organ also is an important biomarker. It will make a lot of sense to extract the volumes if CT images are provided. Make sure the calculation of the volume is done on the original CT volume to avoid errors arising from the large voxel sizes of the PET images. Also, the volume stats should be written in a separate 'volume-stats.csv' file.