MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
Originally posted by **rullator** October 16, 2023
Hi all,
as stated MOOSE can simply be started by typing:
`moosez -d -m clin_ct_organs`
Im comparison to the earlier version, seperated models exist. But how can I start MOOSE aiming to run all models at once?
I already tried:
`moosez -d -m clin_ct_organs -m clin_ct_cardiac`
-> It uses only the last given model.
`moosez -d -m clin_ct_organs clin_ct_cardiac`
-> Returns an error: `moosez: error: unrecognized arguments: clin_ct_cardiac`
Running sequentially
`moosez -d -m clin_ct_organs `
`moosez -d -m clin_ct_cardiac`
-> Runs into error since it creates a folder within each subject (`moosez-clin_*`) and MOOSE cannot handle the created folder in the second run (`IsADirectoryError: [Errno 21] Is a directory: 'SUBJECT/moosez-clin_ct_organs-2023-10-16-12-14-09/CT'`).
Can someone possibly help?
PS: Wasn't sure whether this question belongs to "Issues" or whether I'm just on the wrong way and missed something..
LalithShiyam
commented
1 year ago
Discussed in https://github.com/QIMP-Team/MOOSE/discussions/71