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EOGrady21 / vprr

Video Plankton Recorder Data Processing
https://eogrady21.github.io/vprr/
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vpr_autoid_create() does not accommodate for empty misclassification files #24

Closed kevinsorochan closed 2 years ago

kevinsorochan commented 3 years ago

When there is an empty reclassification file and empty misclassification file an empty newaid file is created. This is a problem of course, if there are existing rois in the VP output for that category. I don't think that I have ran into this problem in the past because it requires that all images within a category be identified perfectly by VP 🤣.

I have created a quick fix and hope that it works properly - I also added day and hour arguments to get it to run properly in my application. There needs to be some consolidation and clean up as well. I'm happy to work on this...

The fix just involves an if statement. I tried to attached the full function in previous edits of this post, but it was not working properly.

`if(length(mis_roi) == 0) {

    aid_new <- aid_list_old

    ind <- vector()

    }`
kevinsorochan commented 3 years ago

The same thing needs to be done with the meas files... vpr_auto_create_ks.txt

EOGrady21 commented 2 years ago

I copied the updates made in vpr_auto_create_ks.txt into the function vpr_autoid_create() with notes

The meas file loop still needs to be updated to match

(!) Not yet tested

EOGrady21 commented 2 years ago

I've run some basic testing on this new functionality and it seems to be in order. aid and aidmeas files are now appropriately carried over if misclassified files are empty (in case there were no mistakes made by VP). 'reclassified' ROIs are still added to the files in this case.