Closed kevinsorochan closed 11 months ago
I was able to make a quick but not ideal fix in vpr_autoid_create() using:
if(unique(mis_roi) == "") {
mis_roi <- mis_roi[-c(1)]
}
The empty files likely just have one '\n' (a new empty line separator) due to the way the file is written
cat(misclassified, sep = '\n')
I would suggest fixing this on the vpr_auotid_read() end of things. Although this issue is avoided if empty files are deleted as in the original workflow.
To fix in vpr_autoid_read, add a check for 'empty' files before reading them in. (line 786 in EC_functions.R)
for(i in 1:length(file_list_aid)) {
data_tmp <- read.table(file = file_list_aid[i], stringsAsFactors = FALSE, col.names = col_names)
data_tmp$roi <- unlist(vpr_roi(data_tmp$roi))
# Add in suggested check
suggested (pseudocode) check: if( data_tmp$roi[1] == ''){ skip_file[i] <- TRUE }
This has been resolved through other issues
Describe the bug "Empty" reclassification files created by vpr_manual_classification() still have 1 line. This causes problems when running vpr_autoid_create() which expects the files to have a line number of zero.
To Reproduce Reproducible code example of the bug, with output if appropriate.
Expected behavior
vpr_autoid_create() expects the empty reclassification file to have zero lines
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