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A lightweight server for denormalized EOL data
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Prokaryote TraitBank data not showing up on taxon page #237

Closed diatomsRcool closed 8 years ago

diatomsRcool commented 8 years ago

The prokaryote data set was harvested and shows up in my EOL account, but the data itself doesn't appear on any taxon pages. I have checked the measurements and values and all appears to be in order. Jeremy says its not cached.

JRice commented 8 years ago

Relevant logs:

## 31-04:19:33.414(0.02) resource.rb:454#port_traits
## 31-04:19:33.417 resource_porter.rb:22#port
.. 31-04:19:35.191(1.77) Finding metadata for 0 traits...
.. 31-04:19:35.205(0.01) No data to insert, skipping.
## 31-04:19:35.205 Return from resource_porter.rb:40#port

...So looks like there was a problem getting the traits into the OLD TraitBank, since there was nothing to pull over. Hmmmn.

JRice commented 8 years ago

There's nothing in the harvest log for this resource, either. I'll suggest re-harvesting this (and manually watching it) to see what happened.

JRice commented 8 years ago

Given what happened today, I suspect this is just a case of the resource not being re-downloaded.

diatomsRcool commented 8 years ago

Is this something I need to do?

On 4/11/2016 3:26 PM, Jeremy Rice wrote:

Given what happened today, I /suspect/ this is just a case of the resource not being re-downloaded.

— You are receiving this because you authored the thread. Reply to this email directly or view it on GitHub https://github.com/EOL/tramea/issues/237#issuecomment-208514722

Anne E. Thessen, Ph.D. The Data Detektiv, Owner and Founder Ronin Institute, Research Scholar 443.225.9185

JRice commented 8 years ago

FWIW, I just re-downloaded this manually.

JRice commented 8 years ago

I'm not sure that worked. The resulting files are quite old. Perhaps that's expected, though; if so, this was a red herring.

-rw-r--r--   1 www-data www-data  2184 Jan 30  2015 meta.xml
-rw-r--r--   1 www-data www-data 81463 Jan 30  2015 prokaryote_measurement.txt
-rw-r--r--   1 www-data www-data   770 Jan 29  2015 prokaryote_occurrence.txt
-rw-r--r--   1 www-data www-data   141 Jan 29  2015 prokaryote_reference.txt
-rw-r--r--   1 www-data www-data  8763 Apr 13  2015 prokaryote_taxon.txt
diatomsRcool commented 8 years ago

yes, I haven't had to change the files in a while. a

On 4/11/2016 3:30 PM, Jeremy Rice wrote:

I'm not sure that worked. The resulting files are quite old. Perhaps that's expected, though; if so, this was a red herring.

|-rw-r--r-- 1 www-data www-data 2184 Jan 30 2015 meta.xml -rw-r--r-- 1 www-data www-data 81463 Jan 30 2015 prokaryote_measurement.txt -rw-r--r-- 1 www-data www-data 770 Jan 29 2015 prokaryote_occurrence.txt -rw-r--r-- 1 www-data www-data 141 Jan 29 2015 prokaryote_reference.txt -rw-r--r-- 1 www-data www-data 8763 Apr 13 2015 prokaryote_taxon.txt |

— You are receiving this because you authored the thread. Reply to this email directly or view it on GitHub https://github.com/EOL/tramea/issues/237#issuecomment-208516769

Anne E. Thessen, Ph.D. The Data Detektiv, Owner and Founder Ronin Institute, Research Scholar 443.225.9185

JRice commented 8 years ago

Well, I just re-ran it, and, indeed, there were 0 traits to port. So something is still not connecting with the harvest.

I'll look later... just thought it was low-hanging fruit to re-try it now.

JRice commented 8 years ago

I think this is another case where the measurements file has values of TRUE for http://eol.org/schema/measurementOfTaxon, and it needed to be true (lowercase).

I recently added case-insensitivity to this code, so it should actually work if we harvest it again ... but it may also be worth changing it for posterity (though not necessary).