EPFL-LCSB / pytfa

A Python 3 implementation of Thermodynamics-based Flux Analysis
https://lcsb.epfl.ch/
Apache License 2.0
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Thermo DB as SQLite #4

Open Midnighter opened 6 years ago

Midnighter commented 6 years ago

While a compressed pickle is not a bad way to distribute data. It's not very future proof. You might consider creating database models with SQLAlchemy and storing everything in a SQLite database. I'm happy to help if you have any questions about that.

psalvy commented 6 years ago

Hi, Yes, we are aware of this, along with #3. Further support for better integration is planned. In the meantime, we wanted to provide pytfa in a usable form, and although admittedly the current interface for thermodynamics data is clunky, the package should work for basic use cases.