allow resistance marker tables to show locus level granularity

[bgpalmer]

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[bgpalmer]

resmarker_microhap_table.txt resmarker_new_mutations.txt resmarker_table.txt

[andres-ad]

Sorry it took me so long to look at this. This solves what we needed to solve! Can you please modifiy the outputs so that markers show together (jsut cosmetic). e.g. k13 578 shows two times for each sample, they should be consecutive rows, right now all the alleles in one locus show together and then the following locus.

[bgpalmer]

@andres-ad does this look better?

resmarker_microhap_table.txt resmarker_table.txt

[kathryn1995]

Can you please order by chrom and codon ID

[bgpalmer]

resmarker_microhap_table.txt resmarker_table.txt

[kathryn1995]

Outputs look great now, but it would be good to just always have the locus column present, not only if someone sets a flag as we would always want this output where we have tiling to include the locus

[kathryn1995]

Looks good!