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EPPIcenter / mad4hatter

https://eppicenter.github.io/mad4hatter/
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Remove code that replaces insertion in reference with N #128

Closed kathryn1995 closed 9 months ago

kathryn1995 commented 9 months ago

https://app.asana.com/0/1206188951149828/1206188867615102

kathryn1995 commented 9 months ago

I added some test data that I was using. I was also thinking about insertions right next to masked regions and whether we want to filter these out too. Currently if the insertion was right before or after the masking it would still be included in the cigar