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EPPIcenter / mad4hatter

https://eppicenter.github.io/mad4hatter/
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long amplicons #94

Open andres-ad opened 1 year ago

andres-ad commented 1 year ago

current fix has a more stringent filtering of non overlapping reads in dada2. Some of those reads can be stitched back and I think we can do a better job at merging those, but will require some thinking

andres-ad commented 1 year ago

Overlaping reads are concatenated but MAY still overlap (this is evident from the alignments)