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ERGA-consortium
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pipelines
MIT License
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Update AnnoAudit
#55
phuongdoand
closed
5 days ago
0
Update workflow result
#54
phuongdoand
closed
2 weeks ago
0
Adding AnnoAudit - Annotation Assessment pipeline
#53
phuongdoand
closed
3 weeks ago
0
Add augminmods argument to control min number of models to train Augustus
#52
gkanogiannis
closed
1 month ago
2
Fix bug in RepeatMasker.nf when genome is less than 10Mb
#51
gkanogiannis
closed
1 month ago
1
Bug in annotato nextflow pipeline when only genome is provided as input
#50
gkanogiannis
closed
1 month ago
3
Use of smudge_pairs and kmc, instead meryl and hetkmers.
#48
gkanogiannis
closed
1 month ago
5
Little fixes
#47
diegomics
closed
4 months ago
0
protexcluder error
#46
YanisChrys
opened
6 months ago
1
Add yahs snakemake
#45
tbrown91
closed
7 months ago
0
Add snakemake scripts for generation of HiC contact maps
#44
tbrown91
closed
7 months ago
1
Vale hifi pipeline
#42
valegale
opened
10 months ago
6
Added Augustus parameters for Lecanostica acicola
#41
jesgomez
closed
11 months ago
0
Adding script to exon analysis and rename contigs to original version
#40
phuongdoand
closed
11 months ago
0
Add v1 Annotato to main - Phuong Doan's Annotation pipeline for BGE Task 9.4
#39
tbrown91
closed
11 months ago
0
Merge Diego's pushes to main
#38
tbrown91
closed
11 months ago
0
Adding analysis workflow in Nextflow
#36
phuongdoand
closed
1 year ago
0
critical updates
#35
diegomics
closed
1 year ago
0
critical updates
#34
diegomics
closed
1 year ago
0
Critical Galaxy updates
#33
diegomics
closed
1 year ago
0
important updates
#32
diegomics
closed
1 year ago
0
Important updates
#31
diegomics
closed
1 year ago
0
make devel updated as main
#30
diegomics
closed
1 year ago
0
merge updated HiFi+HiC Galaxy workflows
#29
diegomics
closed
1 year ago
0
Merge HiFi & HiC Galaxy workflow with main
#28
tbrown91
closed
1 year ago
0
Corrected error in singularity images
#27
tbrown91
closed
1 year ago
0
Braker pipeline v1
#26
tbrown91
closed
1 year ago
0
Braker pipeline v1
#25
tbrown91
closed
1 year ago
0
Update devel
#24
tbrown91
closed
1 year ago
0
Devel merge - for Vale to start on assembly
#23
tbrown91
closed
1 year ago
0
Decontamination pipeline speedup
#22
tbrown91
closed
1 year ago
1
Add HiC mapping and Yahs scaffolding
#21
tbrown91
closed
1 year ago
0
Devel
#20
tbrown91
closed
1 year ago
0
Create ONT Mito/chloroplast pipelines
#17
tbrown91
opened
1 year ago
3
Devel
#16
tbrown91
closed
1 year ago
0
First yahs snakemake pipeline
#15
tbrown91
closed
1 year ago
0
.
#14
tbrown91
closed
1 year ago
0
merge Tom's updates
#13
tbrown91
closed
1 year ago
0
Updates to purge-dups and genoplots snakemake pipeline
#12
tbrown91
closed
1 year ago
0
Added script to get assembly size from genomescope output
#11
tbrown91
closed
1 year ago
0
add feature to snakemake genoplots
#10
diegomics
closed
1 year ago
1
Tidied up my genoplots folder
#9
tbrown91
closed
1 year ago
0
Updating the repo structure
#8
diegomics
closed
1 year ago
0
Merged conda environments in genoplots folder
#7
tbrown91
closed
1 year ago
0
Added "genoplot" folder to run meryl, genomescope and smudgeplot in one pipeline
#6
tbrown91
closed
1 year ago
0
general structure
#5
diegomics
closed
1 year ago
0
Make pipeline to take in fastq reads , count kmers, run genomescope & smudgeplot
#4
tbrown91
closed
1 year ago
2
Create ONT basecalling scripts
#3
tbrown91
opened
1 year ago
0
Added conda requirements for purge-dups and README
#2
tbrown91
closed
1 year ago
0
Added purge-dups snakemake pipeline
#1
tbrown91
closed
1 year ago
0
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