The macos-latest runner now points to macos-14 using ARM architecture. The netCDF4 or tables dependency is failing here:
Python 3.8:
Collecting netCDF4>=1.5.3 (from viresclient==0.11.6)
Downloading netCDF4-1.6.5.tar.gz (764 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 765.0/765.0 kB 22.2 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [37 lines of output]
Package hdf5 was not found in the pkg-config search path.
Perhaps you should add the directory containing `hdf5.pc'
to the PKG_CONFIG_PATH environment variable
No package 'hdf5' found
reading from setup.cfg...
HDF5_DIR environment variable not set, checking some standard locations ..
checking /Users/runner/include ...
hdf5 headers not found in /Users/runner/include
checking /usr/local/include ...
hdf5 headers not found in /usr/local/include
checking /sw/include ...
hdf5 headers not found in /sw/include
checking /opt/include ...
hdf5 headers not found in /opt/include
checking /opt/local/include ...
hdf5 headers not found in /opt/local/include
checking /opt/homebrew/include ...
hdf5 headers not found in /opt/homebrew/include
checking /usr/include ...
hdf5 headers not found in /usr/include
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "/private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/pip-build-env-bkvfkya0/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=['wheel'])
File "/private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/pip-build-env-bkvfkya0/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
self.run_setup()
File "/private/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/pip-build-env-bkvfkya0/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 311, in run_setup
exec(code, locals())
File "<string>", line 457, in <module>
File "<string>", line 398, in _populate_hdf5_info
ValueError: did not find HDF5 headers
[end of output]
Python 3.9 - 3.11:
Collecting tables>=3.4.4 (from viresclient==0.11.6)
Downloading tables-3.9.2.tar.gz (4.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 57.7 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [12 lines of output]
/var/folders/3m/p59k4qdj0f17st0gn2cmj3640000gn/T/H5closem8a_cz7n.c:1:10: fatal error: 'H5public.h' file not found
#include "H5public.h"
^~~~~~~~~~~~
1 error generated.
cpuinfo failed, assuming no CPU features: 'flags'
* Using Python 3.11.9 (v3.11.9:de54cf5be3, Apr 2 2024, 07:12:50) [Clang 13.0.0 (clang-1300.0.29.30)]
* Found cython 3.0.10
* USE_PKGCONFIG: True
.. ERROR:: Could not find a local HDF5 installation.
You may need to explicitly state where your local HDF5 headers and
library can be found by setting the ``HDF5_DIR`` environment
variable or by using the ``--hdf5`` command-line option.
[end of output]
I guess it might be addressed by adding brew install hdf5 but I'm not clear why hdf5 is not being provided correctly by the python packages or if it is really necessary
The
macos-latestrunner now points tomacos-14using ARM architecture. ThenetCDF4ortablesdependency is failing here:Python 3.8:
Python 3.9 - 3.11:
I guess it might be addressed by adding
brew install hdf5but I'm not clear why hdf5 is not being provided correctly by the python packages or if it is really necessary