Integration of CCPP-ized TJ2016 implementation

[mwaxmonsky]

Updates atmospheric_physics to the latest tag bringing in TJ2016 capability and additional changes needed in support of TJ2016.

Describe any changes made to build system: N/A

Describe any changes made to the namelist: N/A

List any changes to the defaults for the boundary datasets: N/A

Describe any substantial timing or memory changes: N/A

Code reviewed by: nusbaume, peverwhee

List all existing files that have been modified, old files eliminated, new files added and describe the changes:

M Externals_CAM.cfg

• Updating to latest CCPP Framework needed for build.
• Updating to latest atmospheric_physics needed to bring in TJ2016.

M src/control/cam_comp.F90

• Removing CAM suite and dynamic_constituents to match new API.

M src/data/physconst.meta

• Updating two standard names.

M src/data/registry.xml A src/dynamics/utils/hycoef.meta

• Exposing sum_of_sigma_pressure_hybrid_coordinate_a_coefficient_and_sigma_pressure_hybrid_coordinate_b_coefficient (etamid) to physics schemes.

M src/dynamics/utils/hycoef.F90

• Updating lev, ilev, hybi, hyai to be read in by their standard names and updating PIO checks appropriately.

A tools/generate_input_to_stdnames_update.py

• Adding new script to convert CSV file exported from standard names spreadsheet into the inputnames_dictionary.xml

M tools/inputnames_to_stdnames.py

• Updating script to be tphysac/tphysbc aware to avoid duplicate standard names in snapshots.

M tools/stdnames_to_inputnames_dictionary.xml

• Adding missing entry for standard_gravitational_acceleration.

M cime_config/testdefs/testlist_cam.xml D cime_config/testdefs/testmods_dirs/cam/outfrq_held_suarez_izumi_nooutput/shell_commands D cime_config/testdefs/testmods_dirs/cam/outfrq_held_suarez_izumi_nooutput/user_nl_cam D cime_config/testdefs/testmods_dirs/cam/outfrq_kessler_izumi_nooutput/shell_commands D cime_config/testdefs/testmods_dirs/cam/outfrq_kessler_izumi_nooutput/user_nl_cam A cime_config/testdefs/testmods_dirs/cam/outfrq_tj2016_derecho_nooutput/shell_commands A cime_config/testdefs/testmods_dirs/cam/outfrq_tj2016_derecho_nooutput/user_nl_cam

• Adding derecho build test for tj2016, updating existing tests to build using both compilers (gnu and intel) and removing izumi tests based on discussion from 7/15/24 to simplify test setup process.

If there were any failures reported from running test_driver.sh on any test platform, and checkin with these failures has been OK'd by the gatekeeper, then copy the lines from the td.*.status files for the failed tests to the appropriate machine below. All failed tests must be justified.

derecho/intel/aux_cam derecho/gnu/aux_cam

• All tests pass.

Summarize any changes to answers, i.e.,

• what code configurations: N/A
• what platforms/compilers: N/A
• nature of change (roundoff; larger than roundoff but same climate; new climate): N/A

[mwaxmonsky]

@peverwhee @nusbaume I fixed the merge conflicts and brought in the git-fleximod updates but if either of you had a sec, could you double check I didn't break anything with the fleximod update? Everything works on my end but I just want to make sure the git update works as expected on the user side.

[peverwhee]

@mwaxmonsky I ran a clean check-out of CAM-SIMA with your updates and git-fleximod worked well. I did run into this bug - https://github.com/ESCOMP/CAM-SIMA/pull/280 (introduced by me), but I vote for merging this PR!