Closed rswamina closed 5 years ago
bouweandela
commented
5 years ago The esmvalcore package is not on PyPI yet (I will put it there once we have the first release), it needs to be installed from conda. I don't understand why the conda env update command doesn't do that for you though, can you check if something went wrong? Run conda env export to see all packages installed in the current environment.
rswamina
commented
5 years ago I do not see esmvalcore installed when I ran the command. Should I install it separately?
bouweandela
commented
5 years ago The command conda env update --file environment.yml -name esmvaltool should update the esmvaltool environment according to the specification in the environment.yml file. Can you check the contents of that file and check that they are identical to what is in the version2_development branch? And check that you have actually correctly activated the esmvaltool environment before running conda env export, e.g. by doing which python and looking at the path, it should be /your/conda/installation/envs/esmvaltool/bin/python?
rswamina
commented
5 years ago Hi, here are the first few lines from my environment.yml file..seems to be the same (checked the whole file of course). Also checked the path before doing the conda env export.
name: esmvaltool channels:
dependencies:
rswamina
commented
5 years ago I am not sure that a fresh code checkout and new environment will help either because I did do a checkout followed by an update so am really not sure where this problem is coming from? The same steps (pull followed by env update followed by setup) done after the first time esmvaltool was split into esmvalcore and esmvaltool worked fine. I am guessing something else has changed?
rswamina
commented
5 years ago I installed esmvalcore separately conda install -c esmvalgroup -c conda-forge esmvalcore
and then ran setup and did not get an error. I tried running a simple recipe and it seemed to work. Is it alright to proceed on or is this a wrong fix?
valeriupredoi
commented
5 years ago you can of course install esmvalcore as any pip (not yet pip, but will be pip-ed by @bouweandela ) and then proceed with a fresh installation of esmvaltool in a suitable esmvaltool environment should do that for you. As Bouwe mentioned an update of the environment with the environment file environment.yml containing esmvalcore as dependency should also do the trick.
Note the following:
esmvalcore as an installed dependency, but that has (for some reason) been removed from target, when you run python setup.py develop or python setup.py install or pip install -e '.[develop]' without an a priori re-installation of esmvalcore you will run into:
Installed /home/valeriu/ESMValTool
Processing dependencies for ESMValTool==2.0.0b0
Searching for esmvalcore<2.1,>=2.0.0b0
Reading https://pypi.org/simple/esmvalcore/
Couldn't find index page for 'esmvalcore' (maybe misspelled?)
Scanning index of all packages (this may take a while)
Reading https://pypi.org/simple/
No local packages or working download links found for esmvalcore<2.1,>=2.0.0b0
error: Could not find suitable distribution for Requirement.parse('esmvalcore<2.1,>=2.0.0b0')because the installer looks for the esmvalcore package first in $HOME/$USER/anaconda3/envs/esmvaltool/lib/python3.7/site-packages/ and if it can't find it it will default to https://pypi.org/simple/esmvalcore which don't exist. So your error is perfectly reproducible -
conda env update --file environment.yml -name esmvaltool -vv that will create a new environment called ame that will in fact have all correct deps including esmvalcore: you have a bash syntax error in your command - it should be --name or -n and this is the root cause of your issuesvaleriupredoi
commented
5 years ago if you run conda env update --file environment.yml -name esmvaltool -vv that will create a new environment called ame that will in fact have all correct deps including esmvalcore: you have a bash syntax error in your command - it should be --name or -n and this is the root cause of your issues
This fixes your issue @rswamina so I am gonna close this, feel free to reopen if you think it's something else at bay
ValerioLembo
commented
5 years ago Hi all,
I am reopening this issue because I do not want to open a new one, and I think my problem could be related. I am trying to install esmvaltool on a new machine, and apparently I cannot set a new environment with the environment.yml list, because it cannot find the esmvalcore package in the esmvalgroup channel.
When I run conda-env create --name esmvaltool --file environment.yml I get this:
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- esmvalcoreWhen I try to install esmvalcore on my own ( conda install -c esmvalgroup -c conda-forge esmvalcore ) I also get:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- esmvalcore
Current channels:
- https://conda.anaconda.org/esmvalgroup/osx-64
- https://conda.anaconda.org/esmvalgroup/noarch
- https://conda.anaconda.org/conda-forge/osx-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.I encountered exactly the same problem when trying to install esmvaltool on the machine of something who wanted to use it, and I had to give up in the end (hope other potential users have been more successful than us!).
Any idea on why this is happening? I do not think I have to attach the environment.yml because I got it today from the repository in the version2_development branch.
Thank you, Valerio
rswamina
commented
5 years ago @ValerioLembo - just checking that when installing from source you cloned form the ESMValCore github reporistory for the esmvalcore package? That worked for me. I did not try the conda installations.
valeriupredoi
commented
5 years ago hey @ValerioLembo I can not reproduce the issue on two different machines: both the environment creatin and the separate on its own installation of esmvalcore work for me as they should - can you try again and make sure you have connection to esmvalgroup by listing the package info on channel by conda search -c esmvalgroup esmvalcore
ValerioLembo
commented
5 years ago Hi @valeriupredoi. I tried to look for esmvalcore in the channel you suggest, but this is what I get (and same happens to my colleague). Am I missing something?
conda search -c esmvalgroup esmvalcore
Loading channels: done
No match found for: esmvalcore. Search: *esmvalcore*
PackagesNotFoundError: The following packages are not available from current channels:
- esmvalcore
Current channels:
- https://conda.anaconda.org/esmvalgroup/osx-64
- https://conda.anaconda.org/esmvalgroup/noarch
- https://conda.anaconda.org/conda-forge/osx-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.looks like you are trying the install on a Mac or at least under OSX (hence the defaulting to noarch or osx-64) - try forcing the installation straight from the (only available) architecture via conda install -c esmvalgroup/linux-64 esmvalcore although I doubt that'll work>
@bouweandela we should create a noarch for esmvalcore
valeriupredoi
commented
5 years ago soz, the correct command is conda install -c esmvalgroup/linux-64 -c conda-forge esmvalcore
ValerioLembo
commented
5 years ago @valeriupredoi I tried to install esmvalcore with the options that you suggested, but there is a mess of package conflicts preventing from having it (they are a lot, but if you want me to do that I can attach them in a separate comment). I have conda updated all the packages in the environment.
Now... I have two guesses:
esmvalcore and the newest updates of the packages;Either way it seems to me that there is no easy workaround...
valeriupredoi
commented
5 years ago just to confirm - are you performing the installation on an OSX box?
ValerioLembo
commented
5 years ago Yes I do. And to be more precise, the package for which I am having conflicts is libcxx
valeriupredoi
commented
5 years ago right! so I'd suggest halting the installation trials since we need to make esmvalcore noarch-compatible, the stuff that comes with it is too messy to be installed on an OSX right now; either that or we declare we don't support OSX installations but that's not up to me but a decision to be taken by the whole @ESMValGroup/esmvaltool-coreteam
ValerioLembo
commented
5 years ago Alright. I think one has to be clear with users on that. From a few feedbacks I had, some find difficult to retrieve information about the official release of ESMValTool and how to use it.
As for the OSX, I would support the idea of having it available multi-platform. Many people would use it locally, especially for doing simple straightforward diagnostics.
valeriupredoi
commented
5 years ago I'll try grab a Mac one of these days and install it, any specs on OSX and such pls? :beer:
ValerioLembo
commented
5 years ago Hi @valeriupredoi,
I am trying to install the package on MacOS Sierra (10.12.6).
I have Anaconda3 installed (Conda version: 4.7.10). The Conda list (prior to the installation of the default ESMValTool environment, which is when the setup halts with error) is like this:
# Name Version Build Channel
_anaconda_depends 2019.03 py37_0
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
alabaster 0.7.12 py37_0
anaconda 2019.07 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.7 py37_0
anaconda-project 0.8.3 py_0 conda-forge
appnope 0.1.0 py37_0 conda-forge
appscript 1.1.0 py37h1de35cc_0
asn1crypto 0.24.0 py37_0
astroid 2.2.5 py37_0 conda-forge
astropy 3.2.1 py37h1de35cc_0
atomicwrites 1.3.0 py37_1
attrs 19.1.0 py37_1
babel 2.7.0 py_0 conda-forge
backcall 0.1.0 py37_0
backports 1.0 py_2 conda-forge
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
beautifulsoup4 4.7.1 py37_1
bitarray 0.9.3 py37h1de35cc_0
bkcharts 0.2 py37_0
blas 1.0 mkl conda-forge
bleach 3.1.0 py37_0
blinker 1.4 py_1 conda-forge
blosc 1.16.3 hd9629dc_0
bokeh 1.2.0 py37_0 conda-forge
boto 2.49.0 py37_0
boto3 1.9.200 py_0 conda-forge
botocore 1.12.200 py_0 conda-forge
bottleneck 1.2.1 py37h1d22016_1
bz2file 0.98 py_0 conda-forge
bzip2 1.0.8 h1de35cc_0
ca-certificates 2019.5.15 0
certifi 2019.6.16 py37_0 conda-forge
cffi 1.12.3 py37hb5b8e2f_0
cftime 1.0.3.4 py37h1e5eb4f_1001 conda-forge
chardet 3.0.4 py37_1
click 7.0 py37_0
cloudpickle 1.2.1 py_0 conda-forge
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
conda 4.7.10 py37_0 conda-forge
conda-build 3.18.9 py37_1 conda-forge
conda-env 2.6.0 1 conda-forge
conda-package-handling 1.4.0 py37_0 conda-forge
conda-verify 3.1.1 py37_1000 conda-forge
contextlib2 0.5.5 py37_0
cryptography 2.7 py37ha12b0ac_0
curl 7.65.2 ha441bb4_0
cycler 0.10.0 py37_0
cython 0.29.12 py37h0a44026_0
cytoolz 0.10.0 py37h1de35cc_0
dask 2.1.0 py_0 conda-forge
dask-core 2.1.0 py_0 conda-forge
dbus 1.13.6 h90a0687_0
decorator 4.4.0 py37_1
defusedxml 0.6.0 py_0
distributed 2.1.0 py_0 conda-forge
docutils 0.14 py37_0
entrypoints 0.3 py37_0
et_xmlfile 1.0.1 py37_0
expat 2.2.6 h0a44026_0
fastcache 1.1.0 py37h1de35cc_0
filelock 3.0.12 py_0
flask 1.1.1 py_0 conda-forge
freetype 2.9.1 hb4e5f40_0
fsspec 0.4.0 py_0 conda-forge
future 0.17.1 py37_1000 conda-forge
gensim 3.4.0 py37h1de35cc_0
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h15daf44_3
gevent 1.4.0 py37h1de35cc_0 conda-forge
glib 2.56.2 hd9629dc_0
glob2 0.7 py_0 conda-forge
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py37h6ef4df4_2
greenlet 0.4.15 py37h1de35cc_0
h5py 2.9.0 py37h3134771_0
hdf4 4.2.13 0 conda-forge
hdf5 1.10.4 hfa1e0ec_0
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icu 58.2 h4b95b61_1
idna 2.8 py37_0
imageio 2.5.0 py37_0 conda-forge
imagesize 1.1.0 py37_0
importlib_metadata 0.17 py37_1 conda-forge
intel-openmp 2019.4 233
ipykernel 5.1.1 py37h39e3cac_0
ipython 7.6.1 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.5.0 py_0 conda-forge
isort 4.3.21 py37_0 conda-forge
itsdangerous 1.1.0 py37_0
jbig 2.1 h4d881f8_0
jdcal 1.4.1 py_0 conda-forge
jedi 0.13.3 py37_0 conda-forge
jinja2 2.10.1 py37_0
jmespath 0.9.4 py_0 conda-forge
joblib 0.13.2 py37_0
jpeg 9b he5867d9_2
json5 0.8.4 py_0 conda-forge
jsonschema 3.0.1 py37_0 conda-forge
jupyter 1.0.0 py37_7
jupyter_client 5.3.1 py_0 conda-forge
jupyter_console 6.0.0 py37_0
jupyter_core 4.5.0 py_0
jupyterlab 1.0.2 py37hf63ae98_0
jupyterlab_server 1.0.0 py_0
keyring 18.0.0 py37_0 conda-forge
kiwisolver 1.1.0 py37h0a44026_0
krb5 1.16.1 hddcf347_7
lazy-object-proxy 1.4.1 py37h1de35cc_0
libarchive 3.3.3 h786848e_5
libblas 3.8.0 11_mkl conda-forge
libcblas 3.8.0 11_mkl conda-forge
libcurl 7.65.2 h051b688_0
libcxx 4.0.1 hcfea43d_1 conda-forge
libcxxabi 4.0.1 hcfea43d_1 conda-forge
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
liblapack 3.8.0 11_mkl conda-forge
liblapacke 3.8.0 11_mkl conda-forge
liblief 0.9.0 h2a1bed3_2
libnetcdf 4.6.1 hd5207e6_2
libopenblas 0.3.6 hd44dcd8_6 conda-forge
libpng 1.6.37 ha441bb4_0
libsodium 1.0.16 h3efe00b_0
libssh2 1.8.2 ha12b0ac_0
libtiff 4.0.10 hcb84e12_2
libxml2 2.9.9 hf6e021a_1
libxslt 1.1.33 h33a18ac_0
llvm-openmp 4.0.1 hcfea43d_1
llvmlite 0.29.0 py37h98b8051_0
locket 0.2.0 py37_1
lxml 4.3.4 py37hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h362108e_2
markupsafe 1.1.1 py37h1de35cc_0 conda-forge
matplotlib 3.1.0 py37h54f8f79_0
matplotlib-base 3.1.1 py37h3a684a6_1 conda-forge
mccabe 0.6.1 py37_1
mistune 0.8.4 py37h1de35cc_0
mkl 2019.4 233
mkl-service 2.0.2 py37h1de35cc_0
mkl_fft 1.0.12 py37h5e564d8_0
mkl_random 1.0.2 py37h27c97d8_0
mock 3.0.5 py37_0 conda-forge
more-itertools 7.0.0 py37_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py37_0
msgpack-python 0.6.1 py37h04f5b5a_1
multipledispatch 0.6.0 py37_0
navigator-updater 0.2.1 py37_0
nbconvert 5.5.0 py_0 conda-forge
nbformat 4.4.0 py37_0
ncurses 6.1 h0a44026_1
netcdf4 1.4.2 py37h13743db_0
networkx 2.3 py_0 conda-forge
nltk 3.4.4 py37_0
nose 1.3.7 py37_2 conda-forge
notebook 6.0.0 py37_0 conda-forge
numba 0.44.1 py37h6440ff4_0
numexpr 2.6.9 py37h7413580_0
numpy 1.16.4 py37hacdab7b_0
numpy-base 1.16.4 py37h6575580_0
numpydoc 0.9.1 py_0 conda-forge
oauthlib 3.0.1 py_0 conda-forge
olefile 0.46 py37_0
openpyxl 2.6.2 py_0 conda-forge
openssl 1.1.1c h1de35cc_1
packaging 19.0 py37_0
pandas 0.24.2 py37h0a44026_0 conda-forge
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
parso 0.5.0 py_0 conda-forge
partd 1.0.0 py_0 conda-forge
path.py 12.0.1 py_0 conda-forge
pathlib2 2.3.4 py37_0 conda-forge
patsy 0.5.1 py37_0
pcre 8.43 h0a44026_0
pep8 1.7.1 py37_0
pexpect 4.7.0 py37_0 conda-forge
pickleshare 0.7.5 py37_0
pillow 6.1.0 py37hb68e598_0
pip 19.1.1 py37_0 conda-forge
pkginfo 1.5.0.1 py37_0
pluggy 0.12.0 py_0 conda-forge
ply 3.11 py37_0
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.9 py37_0
psutil 5.6.3 py37h1de35cc_0
ptyprocess 0.6.0 py37_0 conda-forge
py 1.8.0 py37_0
py-lief 0.9.0 py37h1413db1_2
pycodestyle 2.5.0 py37_0
pycosat 0.6.3 py37h1de35cc_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37h1de35cc_9
pycurl 7.43.0.3 py37ha12b0ac_0
pyflakes 2.1.1 py37_0
pygments 2.4.2 py_0 conda-forge
pyjwt 1.7.1 py_0 conda-forge
pylint 2.3.1 py37_0 conda-forge
pyodbc 4.0.26 py37h0a44026_0 conda-forge
pyopenssl 19.0.0 py37_0 conda-forge
pyparsing 2.4.0 py_0 conda-forge
pyqt 5.9.2 py37h655552a_2
pyrsistent 0.14.11 py37h1de35cc_0 conda-forge
pysocks 1.7.0 py37_0 conda-forge
pytables 3.5.2 py37h5bccee9_1
pytest 5.0.1 py37_0 conda-forge
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.3.0 py37_0
pytest-openfiles 0.3.2 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.3 h359304d_0
python-crfsuite 0.9.6 py37h04f5b5a_1000 conda-forge
python-dateutil 2.8.0 py37_0
python-libarchive-c 2.8 py37_11
python.app 2 py37_9
pytz 2019.1 py_0 conda-forge
pywavelets 1.0.3 py37h1d22016_1
pyyaml 5.1.1 py37h1de35cc_0
pyzmq 18.0.0 py37h0a44026_0
qt 5.9.7 h468cd18_1
qtawesome 0.5.7 py37_1
qtconsole 4.5.1 py_0 conda-forge
qtpy 1.8.0 py_0 conda-forge
readline 7.0 h1de35cc_5
requests 2.22.0 py37_0 conda-forge
requests-oauthlib 1.2.0 py_0 conda-forge
ripgrep 11.0.2 0 conda-forge
rope 0.14.0 py_0 conda-forge
ruamel_yaml 0.15.46 py37h1de35cc_0
s3transfer 0.2.1 py37_0 conda-forge
scikit-image 0.15.0 py37h0a44026_0
scikit-learn 0.21.2 py37h27c97d8_0
scipy 1.3.0 py37h1410ff5_0
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 41.0.1 py37_0 conda-forge
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h0a44026_0
six 1.12.0 py37_0
smart_open 1.8.4 py_0 conda-forge
snappy 1.1.7 he62c110_3
snowballstemmer 1.9.0 py_0 conda-forge
sortedcollections 1.1.2 py37_0
sortedcontainers 2.1.0 py37_0
soupsieve 1.8 py37_0 conda-forge
sphinx 2.1.2 py_0 conda-forge
sphinxcontrib 1.0 py37_1
sphinxcontrib-applehelp 1.0.1 py_0 conda-forge
sphinxcontrib-devhelp 1.0.1 py_0 conda-forge
sphinxcontrib-htmlhelp 1.0.2 py_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.2 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.3 py_0
sphinxcontrib-websupport 1.1.2 py_0 conda-forge
spyder 3.3.6 py37_0 conda-forge
spyder-kernels 0.5.1 py37_0 conda-forge
sqlalchemy 1.3.5 py37h1de35cc_0
sqlite 3.29.0 ha441bb4_0
statsmodels 0.10.0 py37h1d22016_0
sympy 1.4 py37_0 conda-forge
tblib 1.4.0 py_0 conda-forge
terminado 0.8.2 py37_0 conda-forge
testpath 0.4.2 py37_0
tk 8.6.8 ha441bb4_0 conda-forge
toolz 0.10.0 py_0 conda-forge
tornado 6.0.3 py37h1de35cc_0
tqdm 4.32.1 py_0 conda-forge
traitlets 4.3.2 py37_0 conda-forge
twython 3.7.0 py_0 conda-forge
unicodecsv 0.14.1 py37_0
unixodbc 2.3.7 h1de35cc_0
urllib3 1.24.2 py37_0 conda-forge
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.15.4 py_0 conda-forge
wheel 0.33.4 py37_0 conda-forge
widgetsnbextension 3.5.0 py37_0 conda-forge
wrapt 1.11.2 py37h1de35cc_0
wurlitzer 1.0.2 py37_0
xlrd 1.2.0 py37_0
xlsxwriter 1.1.8 py_0 conda-forge
xlwings 0.15.8 py37_0 conda-forge
xlwt 1.3.0 py37_0
xz 5.2.4 h1de35cc_4
yaml 0.1.7 hc338f04_2
zeromq 4.3.1 h0a44026_3
zict 1.0.0 py_0 conda-forge
zipp 0.5.1 py_0 conda-forge
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0 As far as I know, this is the default complete Anaconda3 installation on MacOS systems, plus update of all packages.
Hope this helps.
valeriupredoi
commented
5 years ago OK thanks much @ValerioLembo unfortunately I am not able to grab hold of a Sierra-operated Mac since it's pretty darn old but I'll try on a 10.14.5 Mojave machine, just waiting to get an account on it
valeriupredoi
commented
5 years ago OK here's how you can install correctly ESMValTool with esmvalcore even if there is no dedicated osx-64 or noarch package for it in esmvalgroup (and indeed trying to stock install esmvaltool just from the environment.yml file it don't work since the MacOS will tell conda to look in the noarch or osx-64 channels only):
Anaconda3-2019.07-MacOSX-x86_64.shbash Anaconda3-2019.07-MacOSX-x86_64.sh; tell conda to initialize the (base) channel (it will add nice stuff to your .bash_profile:
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/Users/valeriu/anaconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/Users/valeriu/anaconda3/etc/profile.d/conda.sh" ]; then
. "/Users/valeriu/anaconda3/etc/profile.d/conda.sh"
else
export PATH="/Users/valeriu/anaconda3/bin:$PATH"
fi
fi
unset __conda_setup
# <<< conda initialize <<<- once in the base channel, grab ESMValCore git ball and create its sudo-environment with this file:name: esmvaltool channels:
dependencies:
note that python and gcc are gonzo; create the env as usual: conda env create -n esmvaltool -f environment.yml; activate it; then install esmvalcore as usual by pip install -e '.[develop]'; check the installed package in the environment: conda list esmvalcore;
---
name: esmvaltool
channels:
- conda-forgedependencies:
nco
Note how many packages have now disappeared from the list since they are already installed from the initial creation of the environment from esmvalcore. Now **update** the environment with this file (update is the magic word):conda env update -n esmvaltool -f environment.yml
- install ESMValTool as per usual via `pip install -e '.[develop]'`; run the tests and the `--installation` tests etcVoila. Not pretty, but it works.
valeriupredoi
commented
5 years ago dedicated issue #1253 -> closing this
I wanted to do a code update to the latest version of the code. After a git pull, I updated the environment and ran setup as shown below but encountered an error with setup:
conda env update --file environment.yml -name esmvaltool -vv conda activate esmvaltool python ./setup.py develop
I get the following error:
Processing dependencies for ESMValTool==2.0.0b0 Searching for esmvalcore<2.1,>=2.0.0b0 Reading https://pypi.org/simple/esmvalcore/ Couldn't find index page for 'esmvalcore' (maybe misspelled?) Scanning index of all packages (this may take a while) Reading https://pypi.org/simple/ No local packages or working download links found for esmvalcore<2.1,>=2.0.0b0 error: Could not find suitable distribution for Requirement.parse('esmvalcore<2.1,>=2.0.0b0')
This is the first time I am seeing this error with an update and am not sure I understand the whole esmvalcore-esmvaltool dependency issue. What am I doing wrong and how can I fix this problem?