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EarthScope / ispaq

Python command line script that uses R packages to calculate seismology data quality metrics.
GNU Lesser General Public License v3.0
22 stars 11 forks source link

Problem with installation and usage on macOS M1 chip #23

Open YANG-JAEYEOL opened 8 months ago

YANG-JAEYEOL commented 8 months ago

I attempted to install and use ispaq on the macOS M1 chip by setting up the environment in Anaconda. After installation, I activated the ispaq environment (conda activate ispaq) and tried running run_ispaq.py. However, I encountered the following error:

"ERROR: please activate your ispaq environment before running: No module named 'rpy2'"

To verify the presence of the 'rpy2' module, I executed 'import rpy2' in IPython, and the module was indeed available.

It's worth noting that './run_ispaq.py -h' executed successfully.

I would appreciate guidance on resolving this issue.

gillian-earthscope commented 8 months ago

Hi Yang-Jaeyeol,

Can you try: python run_ispaq.py ... where "..." is the rest of the command that you are running? There has been an issue in the past where running it as ./run_ispaq.py has failed with that error message for unknown reasons.

If that doesn't work, can you verify that you have run: conda activate ispaq CONDA_SUBDIR=osx-64 conda install -c conda-forge --file ispaq-conda-install.txt python run_ispaq.py -I

and that echo $CONDA_DEFAULT_ENV returns the name of the ispaq environment.

Best, Gillian