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Easonhuu / PDI

Predict protein-drug interaction
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Hi, I am just wondering how to access the data? #1

Open YiLin198 opened 3 years ago

YiLin198 commented 3 years ago

I see the file path, but I don't know how to download it. I'm very appreciate if you can share the data. Thanks!

Easonhuu commented 3 years ago

This is a public data set and you can find it at the following address: http://www.pdbbind.org.cn/

---Original--- From: "YiLin198"<notifications@github.com> Date: Sun, Jan 24, 2021 20:18 PM To: "Easonhuu/PDI"<PDI@noreply.github.com>; Cc: "Subscribed"<subscribed@noreply.github.com>; Subject: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1)

I see the file path, but I don't know how to download it. I'm very appreciate if you can share the data. Thanks!

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YiLin198 commented 3 years ago

This is a public data set and you can find it at the following address: http://www.pdbbind.org.cn/ … ---Original--- From: "YiLin198"<notifications@github.com> Date: Sun, Jan 24, 2021 20:18 PM To: "Easonhuu/PDI"<PDI@noreply.github.com>; Cc: "Subscribed"<subscribed@noreply.github.com>; Subject: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1) I see the file path, but I don't know how to download it. I'm very appreciate if you can share the data. Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.

Would you mind sharing the data ./data/total_modified_enzy_seqs-v2.csv and ./data/pdbbind2016.pkl? I have downloaded the PDBBind v2016, but obviously it needed some process to cope with it. I am a newbie in graph deep learning area and I hope I can learn something from running the program. I'm very appreciate if you can share the processed data set through e-mail or any other way. Thanks a lot!

Easonhuu commented 3 years ago

Sorry, the data is processed by others with biomedical background. I'm just cooperating with them to run deep learning experiments. Now the data is on their server, and I don't have permission to copy it until they finish their research work.

------------------ 原始邮件 ------------------ 发件人: "YiLin198"<notifications@github.com>; 发送时间: 2021年1月25日(星期一) 晚上10:19 收件人: "Easonhuu/PDI"<PDI@noreply.github.com>; 抄送: "落苑含樱"<1157028976@qq.com>; "Comment"<comment@noreply.github.com>; 主题: Re: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1)

This is a public data set and you can find it at the following address: http://www.pdbbind.org.cn/ … ---Original--- From: "YiLin198"<notifications@github.com> Date: Sun, Jan 24, 2021 20:18 PM To: "Easonhuu/PDI"<PDI@noreply.github.com>; Cc: "Subscribed"<subscribed@noreply.github.com>; Subject: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1) I see the file path, but I don't know how to download it. I'm very appreciate if you can share the data. Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.

Would you mind sharing the data ./data/total_modified_enzy_seqs-v2.csv and ./data/pdbbind2016.pkl? I have downloaded the PDBBind v2016, but obviously it needed some process to cope with it. I am a newbie in graph deep learning area and I hope I can learn something from running the program. I'm very appreciate if you can share the processed data set through e-mail or any other way. Thanks a lot!

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

YiLin198 commented 3 years ago

Thanks a lot anyway!

Sorry, the data is processed by others with biomedical background. I'm just cooperating with them to run deep learning experiments. Now the data is on their server, and I don't have permission to copy it until they finish their research work. … ------------------ 原始邮件 ------------------ 发件人: "YiLin198"<notifications@github.com>; 发送时间: 2021年1月25日(星期一) 晚上10:19 收件人: "Easonhuu/PDI"<PDI@noreply.github.com>; 抄送: "落苑含樱"<1157028976@qq.com>; "Comment"<comment@noreply.github.com>; 主题: Re: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1) This is a public data set and you can find it at the following address: http://www.pdbbind.org.cn/ … ---Original--- From: "YiLin198"<notifications@github.com> Date: Sun, Jan 24, 2021 20:18 PM To: "Easonhuu/PDI"<PDI@noreply.github.com>; Cc: "Subscribed"<subscribed@noreply.github.com>; Subject: [Easonhuu/PDI] Hi, I am just wondering how to access the data? (#1) I see the file path, but I don't know how to download it. I'm very appreciate if you can share the data. Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe. Would you mind sharing the data ./data/total_modified_enzy_seqs-v2.csv and ./data/pdbbind2016.pkl? I have downloaded the PDBBind v2016, but obviously it needed some process to cope with it. I am a newbie in graph deep learning area and I hope I can learn something from running the program. I'm very appreciate if you can share the processed data set through e-mail or any other way. Thanks a lot! — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.