This will be a introduction to the project, what the problems with bioinformatics in ecology are and how this project aims to fix them. How we will be providing SaaS.
Seirian will talk through Ecology and Yannick will talk through the bioinformatics
Show groups for brainstorming - 11:55am-12:00pm:
This will show people how we have grouped them for the break out groups when discussing the pipeline/analysis they want done (combine computational people with non-computational people)
Lunch - 12:00pm-1:00pm
Nextflow summary - Simon - 1:00pm-1:30pm:
Basic summary of what nextflow is, why we need pipelines and why nextflow is better than alternatives (Simon as snakemake, WDL and CWL experience)
Biology of Synteny pipeline - Chris - 1:30pm-2:00pm:
Talks through cutting edge research, what this analysis provides and general information about synteny
Technical of Synteny pipeline - Simon - 2:00pm-2:30pm:
Talks through resource usage, containerisation, cloud usage, ability to deploy on a HPC
Coffee - 2:30pm-3:00pm
Interactive session - Chris - 2:30pm-3:00pm:
Walk through of a gitpod deployment of the pipeline
Brainstorm ideas - 3:00pm-4:00pm
Talk through what pipelines people could want or need as well as what training the expect
Closing remarks - Yannick - 4:00pm-4:15pm
Basic summary of what we can do to help and next steps
Drinks reception 4.15-5.15pm
Dinner 5.15pm (in Stratford shopping centre)
PLAN FOR THE DAY: VERSION 2
Welcome Drink and light lunch (sandwiches)- 12:00pm-12:30pm
This will be a introduction to the project, what the problems with bioinformatics in ecology are and how this project aims to fix them. How we will be providing SaaS.
Seirian will talk through Ecology and Yannick will talk through the bioinformatics
Summary of Eco-Flow - Chris 1:00pm-1:30pm:
Structure of the day
This will show people how we have grouped them for the break out groups when discussing the pipeline/analysis they want done (combine computational people with non-computational people)
Nextflow summary - Simon - 1:30pm-2:00pm:
Basic summary of what nextflow is, why we need pipelines and why nextflow is better than alternatives (Simon as snakemake, WDL and CWL experience)
Coffee - 2:00pm-2:30pm
Biology of Synteny pipeline - Chris - 2:30pm-3:00pm:
Talks through cutting edge research, what this analysis provides and general information about synteny
Technical of Synteny pipeline - Simon - 3:00pm-3:30pm:
Talks through resource usage, containerisation, cloud usage, ability to deploy on a HPC
Interactive session - Chris - 3:30pm-4.00pm:
Walk through of a Gitpod deployment of the pipeline
Coffee - 4.00pm-4.30pm
Brainstorm ideas - 4:30pm-5:10pm
Talk through what pipelines people could want or need as well as what training the expect
Closing remarks - Yannick - 5:10pm-5:30pm
Basic summary of what we can do to help and next steps
PRIOR TO EVENT: Set up a brochure containing information about:
PLAN FOR THE DAY: VERSION 1
Welcome - 11:15am-11:30am
Introduction - Seirian - 11:30am-11:45am & Yannick 11:45am-11:55am:
Show groups for brainstorming - 11:55am-12:00pm:
Lunch - 12:00pm-1:00pm
Nextflow summary - Simon - 1:00pm-1:30pm:
Biology of Synteny pipeline - Chris - 1:30pm-2:00pm:
Technical of Synteny pipeline - Simon - 2:00pm-2:30pm:
Coffee - 2:30pm-3:00pm
Interactive session - Chris - 2:30pm-3:00pm:
Brainstorm ideas - 3:00pm-4:00pm
Closing remarks - Yannick - 4:00pm-4:15pm
Drinks reception 4.15-5.15pm
Dinner 5.15pm (in Stratford shopping centre)
PLAN FOR THE DAY: VERSION 2
Welcome Drink and light lunch (sandwiches)- 12:00pm-12:30pm
Introduction - Seirian - 12:30pm-12:45pm & Yannick 12:45pm-12:55pm:
Summary of Eco-Flow - Chris 1:00pm-1:30pm:
Structure of the day
This will show people how we have grouped them for the break out groups when discussing the pipeline/analysis they want done (combine computational people with non-computational people)
Nextflow summary - Simon - 1:30pm-2:00pm:
Coffee - 2:00pm-2:30pm
Biology of Synteny pipeline - Chris - 2:30pm-3:00pm:
Technical of Synteny pipeline - Simon - 3:00pm-3:30pm:
Interactive session - Chris - 3:30pm-4.00pm:
Coffee - 4.00pm-4.30pm
Brainstorm ideas - 4:30pm-5:10pm
Closing remarks - Yannick - 5:10pm-5:30pm
Drinks reception 5.30-6.30pm
Dinner 6.30pm (in Stratford shopping centre)
PLEASE NOTE: This is a rough plan, open to change