Get a working Earl grey version

[chriswyatt1]

We need to build a new container for earl grey following the instructions on their git.

When running it with tobybaril/earlgrey_dfam3.7:latest , it does not have some of the packages needed for the final steps, so fails (I think).

[chriswyatt1]

Error:

Error in combine_vars(data, params$plot_env, rows, drop = params$drop) : At least one layer must contain all faceting variables:subclass ✖ Plot is missingsubclass ✖ Layer 1 is missingsubclass Error in combine_vars(data, params$plot_env, rows, drop = params$drop) : At least one layer must contain all faceting variables:subclass ✖ Plot is missingsubclass ✖ Layer 1 is missingsubclass Error in combine_vars(data, params$plot_env, rows, drop = params$drop) : At least one layer must contain all faceting variables:subclass ✖ Plot is missingsubclass ✖ Layer 1 is missingsubclass` Warning message: Graphs cannot be vertically aligned unless the axis parameter is set. Placing graphs unaligned.

          )  (
     (   ) )
     ) ( (
   _______)_
.-'---------|  
   ( C|/\/\/\/\/|
'-./\/\/\/\/|
 '_________'
  '-------'
<<< Tidying Directories and Organising Important Files >>>

/usr/local/bin/earlGrey: line 283: bc: command not found /usr/local/bin/earlGrey: line 284: bc: command not found /usr/local/bin/earlGrey: line 285: bc: command not found

          )  (
     (   ) )
     ) ( (
   _______)_
.-'---------|  
   ( C|/\/\/\/\/|
'-./\/\/\/\/|
 '_________'
  '-------'
<<< Done in 00:00:00.00 >>>

          )  (
     (   ) )
     ) ( (
   _______)_
.-'---------|  
   ( C|/\/\/\/\/|
'-./\/\/\/\/|
 '_________'
  '-------'
<<< TE library, Summary Figures, and TE Quantifications in Standard Formats Can Be Found in /workspace/comparete/work/2d/fea00dbb9df2271ec0839e31be94e2/Drosophila_yakuba_earl_results/Drosophila_yakuba_EarlGrey/Drosophila_yakuba_summaryFiles/ >>>`