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Eco-Flow / comparete

A pipeline to compare TE content across genomes
MIT License
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orthofinder results directory #9

Closed r-mashoodh closed 3 weeks ago

r-mashoodh commented 3 weeks ago

currently orthofinder results end up in a work directory under work/d/i/r/s/Myresult/Results$date/

think we need to move this to results?

chriswyatt1 commented 3 weeks ago

Hey @r-mashoodh , I tried the pipeline with (takes 2 mins to run):

nextflow run main.nf -profile docker,test_bacteria -resume --orthofinder

And it worked as expected with the results/orthofinder folder

image

Maybe your run didn't finish? Or died? Maybe check the pipeline execution log in the pipeline_info results folder

chriswyatt1 commented 3 weeks ago

I have made it so that all the orthofinder output will all be sent to publish dir. Not just specific files:

25f08eb