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Eco-Flow / pollen-metabarcoding

A pipeline developled in collaboration with Exeter University
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M1 mac pipeline fails #4

Open chriswyatt1 opened 1 month ago

chriswyatt1 commented 1 month ago

Running on M1 fails.

Command exit status:

  139

Command output:

  usearch v11.0.667_i86linux32, 4.0Gb RAM (8.0Gb total), 12 cores

  WARNING: Empty prediction in line 1

  qemu: uncaught target signal 11 (Segmentation fault) - core dumped

  .command.sh: line 3:    74 Segmentation fault      usearch -sintax_summary 100.tsv -output "100_domain_summary.txt" -rank d

Checked online and found a few threads which we tried, https://github.com/nextflow-io/rnaseq-nf/issues/7

but it still fails with segmentation fault. usearch is 32 bit and also fails using gitpod, so you can just skip this module with the flag --gitpod... Not a fix but means the pipeline does not fail.