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Eco-Flow / pollen-metabarcoding

A pipeline developled in collaboration with Exeter University
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Fails if some phylum information missing #9

Closed chriswyatt1 closed 4 months ago

chriswyatt1 commented 4 months ago

Having c=class missing from the input database causes the pipeline to fail;

10952483;tax=k:Viridiplantae_33090,p:Streptophyta_35493,o:Rosales_3744,f:Moraceae_3487,g:Ficus_3493,s:Ficus padana_100562; ACACGCACGTTGCTCCCCCACCCCCCCCCCGCAAAACCCCCGTCCCGTAAGGC

We need to edit the script to allow for this.

chriswyatt1 commented 4 months ago

Could add a check somewhere in the R script to make sure it is structured in the correct way... Or maybe this is not needed

chriswyatt1 commented 4 months ago

Fixed with PR #10