EcoClimLab / growth_phenology

Cameron Dow's growth phenology project
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numbers of records removed #141

Closed teixeirak closed 2 years ago

teixeirak commented 2 years ago

@camerondow35 , here's a comment from R1:

"I appreciated the clarifications done concerning the data cleaning process. However, I didn’t find in the manuscript the quantity of data that have been removed at it stages. I believe it is worth mentioning it."

We mention these numbers for some removal categories, but not for the following:

The raw dendrometer band data were screened before analysis to remove records or entire tree-years that were either unreliable or inappropriate for our analysis. First, we manually screened the data for three classes of errors. First, when a measurement was drastically different from previous and following measurements, it was assumed to be a human error and removed. Second, when measurements remained essentially unchanged for several readings, followed by a sudden jump then return to a normal growth pattern, this was assumed to be a case where the band was stuck on the tree bark and then released. In these cases, the full annual record for the tree was removed. Third, data points that deviated substantially from normal growth patterns, but for unknown causes, were removed.

Do you have those numbers? If these are difficult to retrieve, we could compare counts of total band-years vs those that made it into the final analysis, and present just those total numbers.

teixeirak commented 2 years ago

@camerondow35 , this is the one thing we have left to address in order to finish the paper and response to reviews.

teixeirak commented 2 years ago

@camerondow35 , I made the following assumptions when filling in these numbers. Please verify and edit if needed:

If either of these assumptions is incorrect, we'll need to make some edits to the methods section and response to reviews. You do not need to change Extended Data Table 1.

teixeirak commented 2 years ago

Our messages crossed. From Teams chat:

I will fix accordingly.

teixeirak commented 2 years ago

@camerondow35 , I fixed these numbers and believe we can close this issue. Please verify that you agree with my changes and reopen in case there's any problem.

camerondow35 commented 2 years ago

Need to check this

camerondow35 commented 2 years ago

Was 7 off on final count. Should be fixed now

teixeirak commented 2 years ago

Thanks, @camerondow35 !