check that nocite references are working

[teixeirak]

I just discovered that it seems there can only be one "nocite" section in an .Rmd, and a 2nd will override the first so that the references don't appear. We have a nocite section for each table, so need to check/ fix this.

[teixeirak]

@NidhiVinod , you could also look at this if you have time.

[NidhiVinod]

@teixeirak, could we merge the citations, nocite, from the 2 tables into just one?

[teixeirak]

Yes, we want just one nocite section. It's an easy fix... and then spot check to make sure the references are making it in. I also noticed that .Rmd doesn't display warnings when a citation key in the nocite section fails, so you have to be sure they're all correct, or double check that they all make it into the citations section of the knit document.

[NidhiVinod]

I combined the two nocite sections into one, but for some reason nocite is not citing any of the references, and I can't yet figure out why

[NidhiVinod]

okay, figured it out. I think all the citations are included in the references now!

[teixeirak]

Great! I didn't see your second comment at first and was trying to play with it, and in the meantime discovered that there are a few missing citations within that set:

There also seem to be some duplicates (e.g., Carter).

This paper sure has a lot of citations!

[teixeirak]

Also, please confirm that I didn't mess this up when I merged my conflicted version (citing SI items). I think it should be fine.

[NidhiVinod]

I fixed the citations above and took out some duplicates. I am yet to fix chitra-tarak's citation, will get back to this in a bit

[teixeirak]

@NidhiVinod , closing this because the problem is solved. We obviously still have a bit of references cleanup left, but don't need an issue for that.