EcoJulia / Diversity.jl

Julia package for diversity measurement

http://docs.ecojulia.org/Diversity.jl/

BSD 2-Clause "Simplified" License

34 stars 9 forks source link

Add Phylogenetic diversity to system #18

Closed richardreeve closed 7 years ago

richardreeve commented 7 years ago

This is the preliminary work to measure phylogenetic diversity, addressing the phylogenetic part of #5. It will be based on richardreeve/Phylo. Start by testing out the (temporary!) test harness.

codecov-io commented 7 years ago

Codecov Report

Merging #18 into master will decrease coverage by 2.67%. The diff coverage is 87.09%.

@@            Coverage Diff             @@
##           master      #18      +/-   ##
==========================================
- Coverage   98.95%   96.27%   -2.68%     
==========================================
  Files           8       10       +2     
  Lines         286      349      +63     
==========================================
+ Hits          283      336      +53     
- Misses          3       13      +10

Impacted Files	Coverage Δ
src/DiversityMeasure.jl	`100% <ø> (ø)`	:arrow_up:
src/Metacommunity.jl	`95.06% <80%> (-1.15%)`	:arrow_down:
src/API.jl	`80.76% <80.76%> (ø)`
src/Interface.jl	`87.5% <87.5%> (-12.5%)`	:arrow_down:
src/Phylogenetics.jl	`94.44% <94.44%> (ø)`

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 4883863...4d7a0b2. Read the comment docs.

coveralls commented 7 years ago

Coverage remained the same at 98.951% when pulling f4630d9718aca9d7ecc7e62e5f0babee94f6cb0d on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-1.0%) to 97.966% when pulling db82116613f47af5a30cc14c51b4bebf23a6127d on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-1.5%) to 97.492% when pulling cfa31f1d421eaadd9bb811f0ead7e9c979841e15 on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-1.5%) to 97.492% when pulling 107b9c619f0dee54b28b10826ad399b971542743 on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-3.0%) to 96.0% when pulling ba95b17204cc8d4f7119dbb220a4c8b8ee09050b on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-3.0%) to 96.0% when pulling 09b2ee95857376d3e1a99619830594c1d77f3178 on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-2.7%) to 96.275% when pulling ba77d3e35fff23752e60ef42f3a7d950b532958f on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-2.7%) to 96.275% when pulling cd0c201c715c551713cf10dff3c46a6b610984d5 on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-2.7%) to 96.275% when pulling 6de369cfe46d4b69d1e2decffdf9fd14a36c41aa on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.

coveralls commented 7 years ago

Coverage decreased (-2.7%) to 96.275% when pulling 4d7a0b20d958a4a96df0d1f575f2133e117237dc on phylogenetics into 488386365bc970e0619518f401350f04c664cd8e on master.