Closed kescobo closed 3 years ago
This PR implements the following changes: (Please tick any or all of the following that are applicable)
docs/src/
[UNRELEASED]
CHANGELOG.md
@annelle-abatoni - This should be helpful with reading in a bunch of individual metaphlan tables
julia> mss = [MicrobiomeSample("sample\$i") for i in 1:15]; julia> txs = [Taxon("taxon\$i") for i in 1:20]; julia> cm1 = CommunityProfile(spzeros(10,5), txs[1:10], mss[1:5]) CommunityProfile{Float64, Taxon, MicrobiomeSample} with 10 things in 5 places Thing names: taxon1, taxon2, taxon3...taxon9, taxon10 Place names: sample1, sample2, sample3, sample4, sample5 julia> cm2 = CommunityProfile(spzeros(10,5), txs[6:15], mss[6:10]) CommunityProfile{Float64, Taxon, MicrobiomeSample} with 10 things in 5 places Thing names: taxon6, taxon7, taxon8...taxon14, taxon15 Place names: sample6, sample7, sample8, sample9, sample10 julia> cm3 = CommunityProfile(spzeros(10,5), txs[11:20], mss[11:15]) CommunityProfile{Float64, Taxon, MicrobiomeSample} with 10 things in 5 places Thing names: taxon11, taxon12, taxon13...taxon19, taxon20 Place names: sample11, sample12, sample13, sample14, sample15 julia> commjoin(cm1, cm2, cm3) CommunityProfile{Float64, Taxon, MicrobiomeSample} with 20 things in 15 places Thing names: taxon1, taxon2, taxon3...taxon19, taxon20 Place names: sample1, sample2, sample3...sample14, sample15
This function could probably use a better name, but I'll leave it for now/
Add function to join community profiles
Types of changes
This PR implements the following changes: (Please tick any or all of the following that are applicable)
:ballot_box_with_check: Checklist
docs/src/
.[UNRELEASED]
section of the manually curatedCHANGELOG.md
file for this repository.@annelle-abatoni - This should be helpful with reading in a bunch of individual metaphlan tables