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Ecogenomics / BamM

Metagenomics-focused BAM file manipulation
http://ecogenomics.github.io/BamM/
GNU Lesser General Public License v3.0
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Possible string concatenation rather than int additon in bamm make version 1.1.1 #15

Closed Askars closed 10 years ago

Askars commented 10 years ago

bamm make -d Isca_2_Bulk1ml_CLC_contigs.gt1000.fa -c ISCA-2-Bulk1ml_all_R1.fastq.gz ISCA-2-Bulk1ml_all_R2.fastq.gz -t 10 -K

Eventually runs (with 1010G of memory):

samtools sort -m 1010G - /srv/projects/moore_foundation/isca_2_assemble_nextseq_16/Isca_2_Bulk1ml_CLC_contigs.gt1000.ISCA-2-Bulk1ml_all_R1

minillinim commented 10 years ago

moly holy.

will look into it