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Ecogenomics / BamM

Metagenomics-focused BAM file manipulation
http://ecogenomics.github.io/BamM/
GNU Lesser General Public License v3.0
16 stars 7 forks source link

Contam options #31

Closed timbalam closed 8 years ago

timbalam commented 8 years ago

Implemented various bamm options for possible use as a decontamination tool. bamm make --keep_unmapped will keep unmapped reads in the created .bam files. bamm filter -v will select reads that don't satisfy the set mapping stringency criteria.

Also wrote a test for the bamm filter -v mode, and incremented the version number to '1.5.3'.

wwood commented 8 years ago

hey can you remove c/aclocal.m4 and other autogen-created files from the git repo? Not your doing, but..

Also, let's make this 1.6.0 as that's a new feature.

OK with these changes, assume you have write access. Can you deploy on luca too please? ta

timbalam commented 8 years ago

Think that will do it. I don't seem to have write access to the Ecogenomics repositiory.