Closed timbalam closed 8 years ago
hey can you remove c/aclocal.m4
and other autogen-created files from the git repo? Not your doing, but..
Also, let's make this 1.6.0 as that's a new feature.
OK with these changes, assume you have write access. Can you deploy on luca too please? ta
Think that will do it. I don't seem to have write access to the Ecogenomics repositiory.
Implemented various bamm options for possible use as a decontamination tool.
bamm make --keep_unmapped
will keep unmapped reads in the created.bam
files.bamm filter -v
will select reads that don't satisfy the set mapping stringency criteria.Also wrote a test for the
bamm filter -v
mode, and incremented the version number to '1.5.3'.